Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 563 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  131 bits (330), Expect = 7e-35
 Identities = 168/670 (25%), Positives = 273/670 (40%), Gaps = 140/670 (20%)

Query: 3   KLQLLILNCLIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYLPAHGLLEA 62
           K +LLI + LI+  SSC+ +L+    D    D  F+       +L   Y Y+PA      
Sbjct: 2   KNKLLIFSILILCTSSCN-YLEYDESDFLEKDAVFSSFQYTRDFLTNIYSYVPAAF---- 56

Query: 63  NPAIAGGDELYITESFRSAAHVHAWYIS-----HNMQSSARPRCDYWTGADQQNNK-SLY 116
                GGD L      RSAA   A Y+      H+  + A      W+  +  +++ + +
Sbjct: 57  --GTIGGDAL------RSAACDEAVYVDKLSPVHSFNNGA------WSAINTLDDRWNYF 102

Query: 117 QGISDCNIFLENI--QKVPDMTQ--------AEKDRWAAEVRFLKAYYHYWLIRMYGPIP 166
           +GI   N+FL+ +  Q+  ++          A+   +  E RFL+AY+++ L + YG IP
Sbjct: 103 RGIRAVNMFLQEVEGQEFDELKHNEDYEDIMAQFKYYPYEARFLRAYFYFELAKRYGDIP 162

Query: 167 IMDQNIPVNAGEEEVKVFRNT-IDECFDYVINTLTEIIDSNHLPDKIMNEAE-ELGRITQ 224
           +    I     EEE  + + T  DE   ++++    I  + HLP       + E GR T+
Sbjct: 163 L----ITTLLSEEEANMQKRTSFDEVIQFIVDECDAI--APHLPISYKELIKSETGRATR 216

Query: 225 GIAMAIRAEVMVTAASPLFN--GNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACK 282
           G AMA+++  ++ +ASPLFN  GN D                        +W  AA A  
Sbjct: 217 GAAMALKSRALLYSASPLFNKSGNID------------------------KWKSAARAAA 252

Query: 283 QAIEFLKAQGH----DLYKYTSLEYTISDQTRAKMNIRNIVTEKWNQEIIWANSNSIIGQ 338
             IE     G+    DL+   +  Y+                   N E+I+         
Sbjct: 253 DVIEKAWDFGYMPLPDLWSLWNNNYSN------------------NNELIFGVMQREDNW 294

Query: 339 LQDHAIPRGLEPGKEGNASVGGNLAVPLKIADLFYTKNGVPITEDKTWNYDDRLELRKAT 398
            +    P G+E G  GN    G+      +       +G+P+  D  + + D        
Sbjct: 295 FERVNFPIGIEGG--GNT---GHCPTENLVESYEMQASGLPVAPDAGYEHMD-------- 341

Query: 399 SDDKYFIKEGYTTASINFDREVRYYASLGFDGAVWFGQGVTDETKPIYVQCKQGQSAANQ 458
                     Y + +    R+ R Y  +  +GA W    V DE     V+C  G  +   
Sbjct: 342 --------PSYNSQNPYEGRDPRMYELVAQNGAWW----VYDE----QVECWYGGRSGKP 385

Query: 459 ISNSWNETGIWPKKLVHFKSVVGQTSGFTKITYPFPVMRLGNLYLLYAEAL-------NE 511
             N+   TG + +K V   + + ++   T   + + +MR   + L +AEA+       N 
Sbjct: 386 QKNA-TVTGYYLRKYVDGSTSL-KSEFVTSKRHVWNIMRYSEILLNFAEAMVEAYGDPNY 443

Query: 512 SGASKTDVLTWVDLIRERAGLEGVEESWDTYTNNKKYETVDGRREIIQQERGIELAFEAQ 571
                      VD++R R     V      + NN    T++  +  ++ ER +EL+FE  
Sbjct: 444 KDGYPMSAKEAVDIVRSR-----VHVDMPPFPNNL---TLNEFKAKLRNERRVELSFEDH 495

Query: 572 RFWDLRRWKLAYQEQNKPITGWN-TQYSTNEDYYTEQLIYAQEFRIRNYFWPILDKELYS 630
           RFWD+RRWK+A  +Q   I G + T+       Y + L+  + F+   Y +PI   E Y 
Sbjct: 496 RFWDIRRWKIA--DQTTDIYGVDITKKEDGSFSYKKVLVEKRIFKDCMYLYPIPQSERYI 553

Query: 631 NKNLVQNYGW 640
           N  L QN GW
Sbjct: 554 NPELEQNPGW 563