Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 634 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  122 bits (307), Expect = 4e-32
 Identities = 171/702 (24%), Positives = 263/702 (37%), Gaps = 133/702 (18%)

Query: 3   KLQLLILNC--LIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCY--YYLPAHG 58
           KLQ  I+    L++ LSSCD FLD +PDD     + FT   Q +  +   Y         
Sbjct: 2   KLQKSIIGIGVLLLSLSSCDDFLDRMPDDKKNEVDVFTRYEQVDNLVTDLYARAKFANRP 61

Query: 59  LLEANPAIAGGDELYITESFRSAAHVHAWYISHNMQSSARPR---C-DYWTGADQQNNKS 114
           L+  N   + G     T S    A  H + I +   S   P    C  YW          
Sbjct: 62  LIFMNHFGSAGLTDECTASSHEQAIPHQFNIGNYGPSQGMPNNSSCGQYWW--------D 113

Query: 115 LYQGISDCNIFLENIQKV------PDMTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIM 168
           LY GI   NI LE ++K        D  + + +R   E  F +AY HY +IR YG    M
Sbjct: 114 LYNGIRRANIILEGVKKYNTPDNPKDGREGDLERRLGETLFFRAYLHYLVIRAYGEGVYM 173

Query: 169 DQNIPVNAGEEEVKVFRNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAM 228
           D    V  GE+   V      E F  ++  +    D+ +         E  GR+ +G  +
Sbjct: 174 DH--VVVPGEDMAYV-----KESFHSMVEKICADADAAYEKVDASYGGEYFGRVDKGACL 226

Query: 229 AIRAEVMVTAASPLFNGNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFL 288
            ++A V   AA+PL+NG       T       F    +  D K RW  A +A K  +E  
Sbjct: 227 GLKAIVRWMAATPLWNGG------TLPNDTRAFKDEYTTYDPK-RWEAARDAAKDVLEAK 279

Query: 289 KAQGHDLYKYTSLEYTISDQTR-----AKMNIRNIVTEKW---------NQEIIWANSNS 334
              G   YK  +     +D  +     A  N   +    W          QE +W  +  
Sbjct: 280 DVNGAIRYKLYAPAAMDADDFKDVDGNANTNNGKVQERLWQMFYNMDAIQQEWVWFTTRD 339

Query: 335 IIGQLQDHAIPRGLEPGKEGNASVGGNLAVPLKIADLFYTK---NGVPITED--KTWNYD 389
                    +P    P + G+A       +  ++ +  Y      G PI +   K   YD
Sbjct: 340 KDTGWSGDVLP----PSQNGHAR---QRPLQEQVDEYEYISPDGYGYPIYDSRAKIDGYD 392

Query: 390 DRLELRKATSDDKYFIKEGYTTASINFDREVRYYASLGFDGAVWFG--QGVTDETKPIYV 447
           D         D +++             R++RY+ S       W+G  Q  T E K    
Sbjct: 393 DENPYESVKRDPRFY-------------RDIRYHGS-------WYGGKQLNTAEGK---- 428

Query: 448 QCKQGQSAANQISNSWNETGIWPKKLVHFKSVVGQTSGFTKITYPFPVMRLGNLYLLYAE 507
                 + ++    + + +G + +KL  FK    +  G   I  P  + RL     +YAE
Sbjct: 429 -----DAVSSSYLEASSHSGYYLRKL--FKDGWDRNKGGHVINGP-AIWRLPTFIYIYAE 480

Query: 508 ALNESGASKTDVLTWVDLIRERAGLEGVEESWDTYTNNKKYETVDGRREIIQQERGIELA 567
           A+N+      ++   V+ +RER+ +  +  +  T  N          +E IQ+ER +EL 
Sbjct: 481 AVNKVSGPTQEIYDLVNSVRERSFMAPMPPAVLTDANL--------MQEYIQRERRVELF 532

Query: 568 FEAQRFWDLR---------------------RWKLAYQEQ----NKPITGWNTQYSTNED 602
           +E  R+W  R                      W  A  ++     KP+   N +   +  
Sbjct: 533 YENWRYWATRLYMESDDPIELAKEKNYIGPESWPYAKSQRCSHGMKPVEDPNGKIEVDGK 592

Query: 603 YYTEQLIYAQEFRI----RNYFWPILDKELYSNKNLVQNYGW 640
            Y  + I   + R+    R+YFWPI+  EL     L+QN GW
Sbjct: 593 RYKMKRIAVNDGRVFYSPRSYFWPIMQDELSRTPTLIQNPGW 634