Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 644 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  135 bits (339), Expect = 7e-36
 Identities = 164/685 (23%), Positives = 280/685 (40%), Gaps = 118/685 (17%)

Query: 3   KLQLLILNC---LIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYLPAHGL 59
           KL+ + L+    L + LSSC  F+D+ P+D       ++    A+  +   Y Y+     
Sbjct: 4   KLKYICLSAAAGLTLSLSSCSDFMDLTPEDQYDEATVWSDADLAKTVVNDVYSYV-CDIA 62

Query: 60  LEANPAIAGGDELYITESFRSAAHVHAWYISHNMQSSARPRCDY-WTGADQQNNKSLYQG 118
            E NP  A  D+ + T  +       A     N+ +  R  C + W+          Y+G
Sbjct: 63  QEVNPD-AWTDDAFFTHVYGCRDINEATVSPSNLGAYDRDDCPFKWS--------KQYKG 113

Query: 119 ISDCNIFLENIQKVPDMTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIMDQNIPVNAGE 178
           I   N+ L NI  VP+ T  + +    E  FL+AY +  L+R +G +PI+D+   +    
Sbjct: 114 IYRANLVLANIDNVPEKTGVDLNILKGETYFLRAYIYTELLRGFGGVPIVDKVYSIEEA- 172

Query: 179 EEVKVFRNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAMAIRAEVMVTA 238
             + + R  + +  D+++  + +   ++ LP++       LGR T+G A A++A +++  
Sbjct: 173 SALNLPRANVADVMDFILKDIEQA--TSLLPEQ--QTGVNLGRATKGAAKALKARLLLHV 228

Query: 239 ASPLFNGNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFLKAQGHDLYKY 298
           ASPLF   AD       R +     N+   D++  +  A +A K  I        +   Y
Sbjct: 229 ASPLF---AD-------RTVNKLECNQYTGDRQALYQQALDAAKDVI--------NDSNY 270

Query: 299 TSLEYTISDQTRAKMNIRNIVTEKWNQEIIWANSNSIIGQLQDHAIPRGLEPGKEGNASV 358
           + ++              NI+    N+E IW+                     +  N  +
Sbjct: 271 SLIDCNAGTIKEIAEKFHNIIITN-NEETIWSK--------------------QYVNKDL 309

Query: 359 GGNLAVPLKIADLFYTKNGVPITEDKTWNYDDRLELRKATSDDKY---FIKEG-YTTASI 414
             +  V  ++A L +  NG          +D  L +   T + K     +K G  TT + 
Sbjct: 310 NADNWVRNRVA-LLHGPNGYHNWAGTAPTHD--LVMAFETEEGKILNTLLKPGESTTENP 366

Query: 415 NFDREVRYYASLGFDGAVW----FGQGVTDETKPI------YVQCKQGQSAANQISN--- 461
             +RE R+YA++G+DGA W       G   +  P+      Y +  +G +  N I +   
Sbjct: 367 YMNREPRFYATIGYDGAEWGRPRASDGAVFDATPLGNLQFGYYELSEGGNNVNAIYSVDD 426

Query: 462 ------------------------SWN--ETGIWPKKLVHFKSVVGQTSGFTKITYPFPV 495
                                   +WN   TG   KKL+   SV      F   T P P 
Sbjct: 427 DNNPIKQEKFNGMVGVDTRMGQIENWNGTYTGYLEKKLID-GSVAANEHNFQ--TCPMPY 483

Query: 496 MRLGNLYLLYAEALNESGASKTDVLTWVDLIRERAGLEGVEESWDTYTNNKKYETVDGRR 555
           +RL  +YL+ AEA  E      + + ++D IR R G    + +       + +   D  R
Sbjct: 484 IRLAEMYLIAAEACIELN-KLDEAVIYIDAIRGRIGRPDTKAT--LAVRGQTFNQSD-LR 539

Query: 556 EIIQQERGIELAFEAQRFWDLRRWKLAYQEQNKPITGWNTQYSTNEDYYTEQLIYAQEFR 615
           E ++ ER +EL +E  R++D+RRW +A +  NK +TG +      +   T  L Y  +  
Sbjct: 540 EFLRHERRVELTYEHSRYYDIRRWMIAPEIGNKKLTGVSI-VGRLKPGKTASLPYVHDEE 598

Query: 616 IRNYFWPILDKELYSNKNLVQNYGW 640
           + NY W +L      N N ++   W
Sbjct: 599 VYNYTWTVL------NLNYIEKRKW 617