Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 652 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  173 bits (439), Expect = 2e-47
 Identities = 191/699 (27%), Positives = 300/699 (42%), Gaps = 108/699 (15%)

Query: 1   MKKLQLLILNCLIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYLPAH--G 58
           MK  + + +      +  C  +LD  PDD  T++  F  R + E +L   Y  +P     
Sbjct: 1   MKLFKYITIALSSFFMCGCSDYLDNAPDDTLTMEMVFNDRTRTEDWLSGVYNRVPDTYWA 60

Query: 59  LLEANPAIAGGDELYITESFRSAAHVHAWYISHNMQSSARPRCDYWTGADQQNNKSLYQG 118
           LL      + GD+L  ++ +        W  S N           W  A  + N      
Sbjct: 61  LLRTWGYDSMGDDLDPSQRW-----YQWWGNSLNFIIGQWFTSSTWDAAIWKENPIR--- 112

Query: 119 ISDCNIFLENIQKVPD--MTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIMDQNIPVNA 176
           I    +F++N   +PD  +++A+ +R   E RFL AYY++ +I  +G +P  D    VN 
Sbjct: 113 IRSAYLFIKNAHALPDQGVSEADIERMKNECRFLIAYYYWLMIEAHGSVPFFDDLADVN- 171

Query: 177 GEEEVKVFRNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEEL-GRITQGIAMAIRAEVM 235
            +  +   +   DE  D++   L ++  S  LP   +NE+ +  GR T  + +A+RA ++
Sbjct: 172 -DPNLMRGQMPFDEMVDWIDAQLVDL--SKKLPASYLNESTQFYGRATSIMCLAVRARML 228

Query: 236 VTAASPLFNGNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFLKAQGHDL 295
           + AASPL NGN  Y G+ +  G   F    S+     +W  AA+A ++ IE   A GHDL
Sbjct: 229 LFAASPLVNGNEWYAGFKNYDGKFRF----SQTYDPAKWKRAADANRELIEAAHAAGHDL 284

Query: 296 YKYTSLEYTISDQTRAKMNIRNI--VTEKWNQEIIWANSNSIIGQLQDHAIPRGLEPGKE 353
            +    EY         M+  N+  +    N E ++  S+    + + HA PRG      
Sbjct: 285 VR----EYNADGSIDPFMSCYNVFFLRGDQNPEALFIRSDCDFSEFERHATPRG------ 334

Query: 354 GNASVGGNLAVPLKIADLFYTKNG-VPITE----------DKTWNYDDR-----LELRKA 397
             AS  G L V   + D F  K+G +PIT           +K   Y +R      ++RK 
Sbjct: 335 --ASGNGGLGVYQTLVDAFAMKDGSLPITGYDGNYGKPIINKESGYTERGFSAQKDIRK- 391

Query: 398 TSDDKYFIKEGYTTASINFD------------------REVRYYASLGFDGAVWFGQGVT 439
           T  + Y    G T  S+  D                  RE R+Y ++ ++   W+ Q   
Sbjct: 392 TKYNLYRNCPGATVDSVGADGCTYNQVAASGTYNMYVGREPRFYLTVMWN-RQWYHQAGR 450

Query: 440 D--------ETKPIYVQCKQGQSAANQIS-NSWNETGIWPKKLVHFKSVVGQTSGFTKIT 490
           +        +  P +   + G     ++S    N  GI P +                  
Sbjct: 451 EVQMMSNEQDGGPTHDAPQNGYLNRKKVSLEQNNRNGIHPYR------------------ 492

Query: 491 YPFPVMRLGNLYLLYAEALNESGASKTDVLTWVDLIRERAGLEGVEESWDTYTNNK-KYE 549
            P  + RLG  YL YAEALNE      D+L +++LIRERAG+       D+   +K    
Sbjct: 493 -PGILYRLGEAYLNYAEALNECDPGNPDILKYLNLIRERAGMPQYGTGKDSNGFDKIPLN 551

Query: 550 TVDGRREIIQQERGIELAFE-AQRFWDLRRWKLAYQEQNKPITGWN---TQYS--TNED- 602
             D  RE I  ER +EL  E   R+ DLRRWK A +  N+P+ G N   T+ S   N+D 
Sbjct: 552 GQDEVREAIYHERRVELCCENGLRYLDLRRWKKAEEVLNQPMYGMNFSGTKLSDDPNDDA 611

Query: 603 YYTEQLIYAQEFRIRNYFW-PILDKELYSNKNLVQNYGW 640
            + ++  Y +    R ++W PI  +++  +  LVQ   W
Sbjct: 612 AFFKRTQYIKRVYERKFYWYPIYQEQIDKDPTLVQAPFW 650