Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 668 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  158 bits (399), Expect = 8e-43
 Identities = 174/697 (24%), Positives = 294/697 (42%), Gaps = 104/697 (14%)

Query: 7   LILNCLIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYLPAHGLLEANPAI 66
           + L+  ++   SC S+LD++P      D+     +    +LFT Y     +     +   
Sbjct: 13  IALSAGLLAFPSC-SYLDVIPPAQPDFDDTMKDESATLGFLFTAYSGTSRYTFWRESD-- 69

Query: 67  AGGDELYITESFRSAAHVHAWYISHNMQSSARPRCDYWTGADQQNNKSLYQGISDCNIFL 126
             GD    T+ +        W +   +  +     D     D +N   LY  I   + FL
Sbjct: 70  --GDASLATDEYVEPKDWD-WNMQKMLYGTVSAADDI---GDWEN---LYNYIGYVHYFL 120

Query: 127 ENIQKV--PDMTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIMDQNIPVNAGEEEVKVF 184
           E + ++    +T+ EK ++ AE  FL+AYYH+ +++ YGP PI++  +  N    E+   
Sbjct: 121 EQLDRLNPAGVTEEEKAQYRAECWFLEAYYHFKVLQNYGPCPIIETKVDQNILPSEIPG- 179

Query: 185 RNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAMAIRAEVMVTAASPLFN 244
           R+  D C D+++  L    +   LP       E L R    I  +++A V++ AASPL+N
Sbjct: 180 RSHFDYCVDWIVGKLDAAAEV--LP--ATQTTENLSRADATICKSLKARVLLYAASPLWN 235

Query: 245 GNADYKGY------TDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFLKAQGHDLYKY 298
           G+  Y  +      T   G+E+ + NK +  K   W  A  ACK+A+   +A G+ L+  
Sbjct: 236 GSFVYPNWRNTNYETPGYGMELVS-NKYDPAK---WERALTACKEALTAAEAAGYKLFDL 291

Query: 299 TSLEYTIS-----------------DQTRAKMNIRNI---VTEKW---NQEIIWA----- 330
            + E   +                 +    K  +R +   +T      N+EIIWA     
Sbjct: 292 EASEAKAAIDKVPLPFIPGKEEDTEENELFKKQVRMLQYMITAHEGFSNKEIIWAINPQY 351

Query: 331 ----NSNSIIGQLQDHAIPRGLEPGKEGNASVGGNLAVPLKIA-DLFYTKNGVPITEDKT 385
               ++N +        +P  L    +G+ + G +   P   A + FYT+NG+P  +D  
Sbjct: 352 GDGNDANDVGCGRSKSRLPNRLVKKSDGSWAGGYHGTAPTWAAVNRFYTENGLPPAKDPD 411

Query: 386 WNYDDRL-----------ELRKATSDDKYFIKEGYTTASINFDREVRYYASLGFDGAVWF 434
           +                 EL K   D +    +       N  RE RYYA + +DG  + 
Sbjct: 412 FYLQSEWLTRYYEGASSPELSKDQLDSEEIKND---IVKFNVGREPRYYAWIAYDGCEYM 468

Query: 435 GQGVTDETKPIYVQCKQGQSAANQISNSWNETG--IWPKKLVHFKSVVGQTSGFTKITYP 492
              + +   P+++  K   +    +SN+ N TG     KK +    V   +   +   + 
Sbjct: 469 P--LINNNNPLWLNLKNSNTNGYSLSNTRNATGTGFLNKKFIVPNGVYLSSGSTSGDKFR 526

Query: 493 FPVMRLGNLYLLYAEALNESGASKTD-VLTWVDLIRERAGLEGVEESWDTYTNNKKYETV 551
             ++R+  LYL  AE    +   +TD  L  +++IRERAG+             +K  T 
Sbjct: 527 IILIRMAELYLNLAECY--AALDRTDEALENLNVIRERAGV-------------RKLTTA 571

Query: 552 D----GRREIIQQERGIELAFEAQRFWDLRRWKLAYQ----EQNKPITGWNTQYSTNEDY 603
           D       E ++ ER IEL  E  R++D+RRW++A Q     + K + G     S  E  
Sbjct: 572 DLSTMSLMEWVRNERAIELHAEGHRYYDVRRWRIADQVMQPSEFKGLNGMTVNPSFEEFN 631

Query: 604 YTEQLIYAQEFRIRNYFWPILDKELYSNKNLVQNYGW 640
               +    ++ +R Y  PI + ELYS+  LVQ  G+
Sbjct: 632 QIVPIDQPIQWNVRQYLVPIKNSELYSDPQLVQAPGY 668