Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 669 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  157 bits (397), Expect = 1e-42
 Identities = 179/705 (25%), Positives = 291/705 (41%), Gaps = 104/705 (14%)

Query: 1   MKKLQLLILNCLIIVLSSCDSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYL------ 54
           MK  + + L  L + L+ C  F+D  PDDI TID  F  + + E +L   Y  +      
Sbjct: 1   MKFSKYIGLATLCMCLNGCTDFIDNAPDDIITIDMIFDDKTRTEDWLAGVYQGIRDPYWD 60

Query: 55  ----PAHGLLEANPAIAGGDELYITESFRSAAHVHAWYISHNMQSSARPRCDYWTGADQQ 110
                A  +L  +   + G   Y          V  W  +     S      YWT     
Sbjct: 61  YTRYDAFEMLANDITPSQGWLPYWGSDCGLGFRVGQWEPNSGWSGS------YWT----- 109

Query: 111 NNKSLYQGISDCNIFLENIQKVP--DMTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIM 168
               + + I    IF++N++ +P  ++T+++ +    E RF+ AYY++ +   YG +P  
Sbjct: 110 ----MSKYIRQAYIFMDNVKALPKQNVTESDVETMKNECRFMVAYYYWMMTLAYGAVPYF 165

Query: 169 DQNIPVNAGEEEVKVFRNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAM 228
           + ++   +   ++   + + +   D++ N   E+  S  LPD         GR T+  A+
Sbjct: 166 EDDM--TSDSPDLMRGQKSFEWMIDWLDNQFLEL--SKVLPDSWSTLYG--GRATKLAAL 219

Query: 229 AIRAEVMVTAASPLFNGNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFL 288
           A+RA +++ AASPL NGN  Y G+ +S G E F    S+     +W  AA+ACKQ I+  
Sbjct: 220 ALRARILLFAASPLVNGNEWYLGFKNSDGEERF----SQAYDANKWKKAADACKQLIDEA 275

Query: 289 KAQGHDLYKYTSLEYTISDQTRAKMNIRNIVTEKWNQEIIWANSNSIIGQLQDHAIPRGL 348
           + +G  LY   + E    D   +          + N EIIW       G  + H  PRG 
Sbjct: 276 EKKGKGLYIVNNKENGKVDPFMSCYGATMRTEGEGNNEIIWFRPKGNYGDWEQHGTPRGC 335

Query: 349 EPGKEGNASVGGNLAVPLKIAD-----LFYTKNGVPITEDKTWNYDDR-LELRKATSDDK 402
             G  G   V  +L     + D     L Y  +G P        Y ++    +       
Sbjct: 336 --GGNGGLGVTQSLVDAFFMEDGTEPILGYNADGSPKINPNAPLYSEKGFSTKPEYRATD 393

Query: 403 YFIKEGY---------------------TTASINFDREVRYYASLGFDGAVWFGQGVTDE 441
           Y++ +GY                      T ++   RE R+Y ++ ++G  WF +     
Sbjct: 394 YYLMDGYNDSNYPDVTPERDGKRLIVQPNTFNMYCHREPRFYLTVVWNGQ-WF-KWENRN 451

Query: 442 TKPIYVQCKQGQSAANQISNSWNETGIWPKKLVHFKSVVGQTSGFTKITYPFPVMRLGNL 501
           T  +Y Q   G       ++   + G   +  V    +    +   +   P  + R+   
Sbjct: 452 TNFLYGQPDGGP------THDAPQNGYLNRSRVSLDYIPRDNNHPYR---PAIIFRMAEA 502

Query: 502 YLLYAEALNESG---ASKTDVLTWVDLIRERAGL----EGVEESWDTYTNNKKYETVDGR 554
           YL YAEALNES    + K ++L  ++ IR RAG+     G +E+  T       +  + R
Sbjct: 503 YLSYAEALNESSERMSHKQEILDNLNKIRHRAGIAEYGTGTDENGFTRIKINFSDQKEVR 562

Query: 555 REIIQQERGIELAFEAQRFWDLRRWKLAY------QEQ--------NKPITGWN---TQY 597
           R +I +ER +E   E  R+ DLRRWK A+       EQ        N P  G N   T+Y
Sbjct: 563 R-LIHKERRVEFVGEGVRYHDLRRWKTAHYGIGNLNEQGENPDWGVNGPDYGMNYYGTEY 621

Query: 598 STNED-YYTEQLIYAQEFRIRNYFW-PILDKELYSNKNLVQNYGW 640
           +   D  + ++  Y      R ++W PI   E+  +  LVQ   W
Sbjct: 622 TDQGDNAFFKRTKYMDRVYPRKFYWYPIHQSEIDKDPTLVQGPFW 666