Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 563 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  138 bits (348), Expect = 6e-37
 Identities = 168/665 (25%), Positives = 274/665 (41%), Gaps = 138/665 (20%)

Query: 1   MKKLQLLILNCLIIVLSSCDSFLDIVPDDIATI--DNAFTMRAQAEKYLFTCYYYLPAHG 58
           MKK+  +    ++ + SSC S LD   +D+++I  D  +  +     +L   Y  +P+  
Sbjct: 1   MKKI-FITCAAILALFSSCTSVLD--KEDLSSISEDKVWVDKTLTTAFLNALYVSIPSWD 57

Query: 59  LLEANP---AIAGGDELYITESFRSAAHVHAWYISHNMQSSARPRCD-YWTGADQQNNKS 114
              A+    A  GG+    T +              NM  +       YW          
Sbjct: 58  TAAADATDEATGGGNWTQGTTT------------PDNMSDTKDSAPTWYWP--------- 96

Query: 115 LYQGISDCNIFLENIQKVPDMTQAEK---DRWAAEVRFLKAYYHYWLIRMYGPIPIMDQN 171
            Y  I +CNIF++N Q  P++   ++   DR   E RF++AY ++ +++ YG +P++   
Sbjct: 97  -YSDIRNCNIFIQNAQN-PEVCTIDRELADRLTYEARFIRAYLYFEMVKRYGGVPLI--T 152

Query: 172 IPVNAGEEEVKVFRNTIDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAMAIR 231
           IP     +++ V RN+  ECFD++I+ L    +   LPD   + AE+LGR+T+G A A  
Sbjct: 153 IPQEM-TDDLYVKRNSTKECFDFIIDELKACAEG--LPDS--HSAEDLGRVTKGAAKAFL 207

Query: 232 AEVMVTAASPLFNGNADYKGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFLKAQ 291
             V +  ASP FN N                      +  + W  A    K+ + +L  Q
Sbjct: 208 GRVFLFRASPQFNPN----------------------NNNEHWQTAYNYNKETLNYLIGQ 245

Query: 292 GHDLYKYTSLEYTISDQTRAKMNIRNIVTEKWNQEIIWA--NSNSIIGQLQDHAIPRGLE 349
           GH LY                 +   +  ++ N+E+I+A    N    Q +D  +     
Sbjct: 246 GHALYD----------------DYGKLFLDEMNKEVIFAIRYENPTRTQKRDATV----R 285

Query: 350 PGKEGNASVGGNLAVPLKIADLFYTKNGVPITEDKTWNYDDRLELRKATSDDKYFIKEGY 409
           P      + GGN     ++ D F T +G       T+ Y D             + KEG 
Sbjct: 286 PITFSMNNTGGNHPTQ-EVIDRFPTIDG------GTYTYAD-------------WEKEGK 325

Query: 410 TTASINFDREVRYYASLGFDGAVWFGQGVTDETKPIYVQCKQGQSAANQIS---NSWNET 466
              ++  +R+ R+YA++ + G  +F   +           +  ++A N  +   N  ++T
Sbjct: 326 DIFALWENRDKRFYATIVYQGVTYFNTVM-----------ELNENAQNDYAYGKNVGSKT 374

Query: 467 GIWPKKLVHFKSVVG--QTSGFTKITYPFPVMRLGNLYLLYAEALNESGASKTDVLTWVD 524
           G + +K +     V   Q SG   I      +RL  + L YAEA  E G +  +    + 
Sbjct: 375 GYYSRKAIDESLSVTDCQKSGTDYID-----IRLAEVMLNYAEAAVEVGKTN-EAFDMLK 428

Query: 525 LIRERAGLEGV----EESWDTYTNNKKYETVDGRREIIQQERGIELAFEAQRFWDLRRW- 579
            IR+RAG+       E     Y  N      +  RE +++ER IEL FE +R WD+RRW 
Sbjct: 429 QIRKRAGINETSSNPEMKGKVYGLNPNMNQTE-MREAVREERFIELLFEQKRLWDMRRWM 487

Query: 580 ---KLAYQEQNKPITGWNTQYSTNEDYYTEQLIYAQEFRIRN-YFWPILDKELYSNKNLV 635
              KL   +  +     N Q       Y            +N YF P+   E+ +N NL 
Sbjct: 488 IYDKLMNGQGKRHALVMNKQADNTYTTYLFDRDNTPMITNQNIYFLPMKRSEMSNNPNLE 547

Query: 636 QNYGW 640
           Q  GW
Sbjct: 548 QTKGW 552