Pairwise Alignments
Query, 1326 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Subject, 1347 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5
Score = 551 bits (1421), Expect = e-160
Identities = 407/1349 (30%), Positives = 649/1349 (48%), Gaps = 110/1349 (8%)
Query: 37 NGLSQNTVHAILQDKQGFMWFGTKDGLDRYDGISFRAFMKESGTLGNN----FITSLYED 92
+GL QN V +I QD+QGFMWFGT++GL R+DG+ +R+F G I SL+ D
Sbjct: 48 DGLVQNNVLSIAQDRQGFMWFGTENGLSRFDGLRWRSFKNILGDTNKPSSPALIRSLFWD 107
Query: 93 QQGQIWIGTDVGLYVYSPEHETVERFIMKSDLDTGIDYTVNLVTGDKDGGIWVVTQSQAV 152
QQ ++W+GT +GL + P E + L I V VT D G I T + V
Sbjct: 108 QQNRLWMGTALGLITFDPLTEKFRQI----KLPYPIQPEVKQVTRDLSGNILAGTTAGIV 163
Query: 153 FYYNPQTNKLI---NYLSDQSGRLKFGSLGQLYFDSDNVCWLDIRDGNLYFSKDKLQTLV 209
+ NK+I D L ++ SD W G L+ K K ++
Sbjct: 164 LI--TKENKIIASARAFDDGEDIL----CHTIFCGSDGRIWCGTNRG-LFEVKIKADRIM 216
Query: 210 --------PVFPKDGNEPFKGEYICKLLPGPYNCMYVGTITGLKEVNLTNKTVRTLLSKD 261
PVF + E I + + G+ G + L + +
Sbjct: 217 LSRTTAELPVF-------LQKEKITSIKMDNNGRFWFGSYAG--GLLLCHYQQGKFIEAQ 267
Query: 262 ES-----GDDIYVREIAFYSDDELWAGTESGLYIYNLRTKKTVHLRNVSGDPYSISDNAI 316
+ G +R I D ++ T GL+ +++ T L + +GD S+ +++I
Sbjct: 268 QQPALPGGATHKIRSIISLLDHKISVATADGLFFFDINNLNTFELTSKAGDEQSLHNSSI 327
Query: 317 YSICKDREGGIWIGSYFGGVNYYPKQYTYFDKV-YPRTEIDEMGKRVREFCADHDGTLWI 375
+S+ + R G IWIGSY+ G++ F + T ++ + V C + LWI
Sbjct: 328 HSLFQQRSGTIWIGSYYSGLDLIKPPLAPFRHLGIGPTALNLNHRVVSSVCNRNQTELWI 387
Query: 376 GTEDKGLFHYYPSTGLIEPFRHPD-----IYHNVHGLCL---DGNYLWVGHFAKGLNRID 427
GTE G+ Y ST + ++ I N DGN LW+G F+ L+ ++
Sbjct: 388 GTEGGGINIYNQSTKQVSYLKNQQGNDKSISSNFIKTLFKDEDGN-LWIGTFSGTLDVLN 446
Query: 428 LRTHAVKHYFDAPN---DIFSICRTTSGNLWLGTTAGL-----FRYHSETNRFERVPELG 479
T+ ++H ++ SI LW+ ++ GL R H + +R + P L
Sbjct: 447 ASTNTIEHRLTGTERITEVNSIVEDGLNRLWITSSNGLKVYKRIRTHLKADRLMQQPGLK 506
Query: 480 WVFIYNIKEDKQGNLWLATYIDGVYKRNVRTGEWEHYMHDETNPSSLPSNKVLSIFEDSQ 539
+D + LW AT V K + H + P N + +
Sbjct: 507 SFLAGVAFQDTKKRLWFATETK-VMKVEGDSIRIYHLKY--------PVNTI----SEHH 553
Query: 540 NQLWFTTQGGGFCRFDPSGKIFVRYDSSIGLPSNVVHRIEEDEKGLFWITTNKGLVHFNP 599
++ + G F+ F Y + + + V+ I D + W+ ++ GL+ +P
Sbjct: 554 GTIYLGLESRGLAAFNEQRGQFALYQINSQVNNRSVYSIAFDRQNRIWLASDSGLLKVSP 613
Query: 600 KTLEFKVYTIANGLLSNQFNYQSSYKDKNGRIYFGSINGFISFEPSVFVDNDFLPPVVIT 659
K YT A+GL+S FN + Y +++ ++FG+++G I F+P D+ +VIT
Sbjct: 614 KQKIVTQYTKADGLISTNFNINARY-ERDNNLFFGTLDGLIYFDPDQIRDDTTKSSIVIT 672
Query: 660 DFMLFNKKVPVGSTDSPLKQSITLSDYLELQSNQNSFSFSVAALSYQSPDMNTVLYKLEG 719
+F+ VPV S L++SIT ++ +EL NQNS +F A L + P N Y L+G
Sbjct: 673 GMRIFD--VPVEIDSSVLRKSITYTNRVELSHNQNSLTFEFALLDFIKPKKNAFRYSLQG 730
Query: 720 YDSEWYSVGKNLITYSNLPYGTYVLKVKAANSDGIWNPDVRTLKIRILPPFYLSVWAYII 779
W + T++NL GTY L V N W +R L I I PPF+ + WAY++
Sbjct: 731 LSKGWTTTNLAEATFNNLAPGTYTLMVSGNNGSPNWMEPIR-LTINIHPPFWATWWAYML 789
Query: 780 YVILILGALFATFFYFRKRAVEKHQRAMEKFEQEKERELYTSKIEFFTNVAHEIRTPLTL 839
Y I++ +F YF R + K +E EL+ KI FFTNV+HEIRT L+L
Sbjct: 790 YGIILTSIVFFISRYFVLRTLLK-----------REDELHQYKINFFTNVSHEIRTHLSL 838
Query: 840 IKSPLESVLTEKELPENVKMELEIMDQNAERLLNLTNQLLDFRKTENKGFKLNPVECSVG 899
I P+E ++++++L + K ++ + NA RLL L N+LLDFRKTE+K L+ +
Sbjct: 839 ISPPIEQLVSDEQLGKKQKDKILGVAGNARRLLTLVNELLDFRKTEDKHLTLSENVQDLL 898
Query: 900 SIIRSVYKRFTTLVNQKGIELKVEIPEEELLASV---DKEALTKILSNLFTNALKYAQTY 956
I+ + F+ QK I +E +E L ++ D L K + NL NA K+ Q
Sbjct: 899 PILEDCLQMFSETAEQKQITTLLE--KENLKSAFLLCDAFQLKKAIINLLANAYKFTQNG 956
Query: 957 AYLSLSVDEAGKEFTIVMSNDGKIIPIEMRENIFRPFVQYRDGKDIVPGTGIGLALARSL 1016
+ L + + E TI + ++G+ I +F + Q D G GIGLAL++++
Sbjct: 957 GLVKLRISQTYHEVTITIEDNGRGISQSHLNKLFENYYQVADHGFQNTGYGIGLALSKAI 1016
Query: 1017 AELHQGTLTMDQDMEC------NRFILSIPIRHQTASDVLEEEHREKPVYDEEDNETRIM 1070
ELHQGT+T+ +E F +S+P R + A D L + E D D +T+
Sbjct: 1017 VELHQGTITVTSRLETMNEPGHTSFTISLPKRQKEAYDSLAAYNAEHTFPDHGDEQTQHK 1076
Query: 1071 P----SDKDKKEVASVLIVEDNKDMLAFVARQLSPLYHVITAENGIEALKVLEHEYINLV 1126
P + D+ + ++L+ EDN ++ + L+P YHVI + NG EA + + +L+
Sbjct: 1077 PLLPLTQADESQKPTILLAEDNLELATLLDDILNPYYHVIISRNGKEAWEQAKRHIPDLI 1136
Query: 1127 ISDIMMPEMDGLELCEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVE 1186
ISD+MMPEM G + C+ +KSN+ +HIP ILLTAKT E I GL GAD Y+ KPF+ +
Sbjct: 1137 ISDVMMPEMSGFDFCDLIKSNVATNHIPFILLTAKTQTEDVITGLSHGADVYLTKPFTPQ 1196
Query: 1187 YLRVNVANLLSNRERLRRRFIE------SPFIKADTMAQTK---ADEVFIQKLNEYVSQH 1237
L + V NL+ + + + P + + QT+ + F+ +L E ++
Sbjct: 1197 ALLLQVNNLIVAIQNVHTHVGQLLNKNSEPIDIFNQLIQTQLGTESKKFMNQLVENITAS 1256
Query: 1238 LDNTDLVIDDMAEAMNMGRSNFYRKLKGVLDMSPNEYLRLIRLKKAAQLLKDGRYGIVEI 1297
++N + ++++A MNM Y+K+K V S N++++ +RLKKAA+LL+ Y + ++
Sbjct: 1257 IENPEFGVNELARLMNMSTPILYKKVKSVTGSSVNDFIKGLRLKKAAELLETRLYTVYQV 1316
Query: 1298 SYMVGFNSPSYFSNCFKKQFGVLPKDFMQ 1326
SYMVGF YFS FKK FG LP ++++
Sbjct: 1317 SYMVGFLDSRYFSKEFKKFFGKLPSEWIE 1345
Score = 55.5 bits (132), Expect = 3e-11
Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 32/324 (9%)
Query: 30 FRSLDINN---GLSQNTVHAILQDKQGFMWFGTKDG-LDRYDGISFR-AFMKESG----T 80
FR L I L+ V ++ Q +W GT+ G ++ Y+ + + +++K +
Sbjct: 357 FRHLGIGPTALNLNHRVVSSVCNRNQTELWIGTEGGGINIYNQSTKQVSYLKNQQGNDKS 416
Query: 81 LGNNFITSLYEDQQGQIWIGTDVG-LYVYSPEHETVERFIMKSDLDTGIDYTVNLVTGDK 139
+ +NFI +L++D+ G +WIGT G L V + T+E + ++ T VN + D
Sbjct: 417 ISSNFIKTLFKDEDGNLWIGTFSGTLDVLNASTNTIEHRLTGTERIT----EVNSIVEDG 472
Query: 140 DGGIWVVTQSQAVFYYNPQTNKLINYLSDQSGRLKFGSLGQLYFDSDNVCWLDIRDGNLY 199
+W+ + + Y +T+ + L Q G LK G + D+ W
Sbjct: 473 LNRLWITSSNGLKVYKRIRTHLKADRLMQQPG-LKSFLAGVAFQDTKKRLWF-------- 523
Query: 200 FSKDKLQTLVPVFPKDGNEPFKGEYICKLLPGPYNCMYVGTIT-GLKEVNLTNKTVRTLL 258
+T V D + +Y + + +Y+G + GL N + L
Sbjct: 524 ----ATETKVMKVEGDSIRIYHLKYPVNTISEHHGTIYLGLESRGLAAFN-EQRGQFALY 578
Query: 259 SKDESGDDIYVREIAFYSDDELWAGTESGLYIYNLRTKKTVHLRNVSGDPYSISDNAIYS 318
+ ++ V IAF + +W ++SGL + + K G IS N +
Sbjct: 579 QINSQVNNRSVYSIAFDRQNRIWLASDSGLLKVSPKQKIVTQYTKADG---LISTNFNIN 635
Query: 319 ICKDREGGIWIGSYFGGVNYYPKQ 342
+R+ ++ G+ G + + P Q
Sbjct: 636 ARYERDNNLFFGTLDGLIYFDPDQ 659
Score = 51.2 bits (121), Expect = 6e-10
Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 28/304 (9%)
Query: 353 TEIDEMGKRVREFCADHDGTLWIGTEDKGL-----FHYYPSTGLIEPFRHPDIYHNVHGL 407
TE + V D G +W GTE+ GL + ++ P + L
Sbjct: 46 TEDGLVQNNVLSIAQDRQGFMWFGTEN-GLSRFDGLRWRSFKNILGDTNKPSSPALIRSL 104
Query: 408 CLD-GNYLWVGHFAKGLNRIDLRT---HAVKHYFDAPNDIFSICRTTSGNLWLGTTAGLF 463
D N LW+G A GL D T +K + ++ + R SGN+ GTTAG+
Sbjct: 105 FWDQQNRLWMG-TALGLITFDPLTEKFRQIKLPYPIQPEVKQVTRDLSGNILAGTTAGIV 163
Query: 464 RYHSETNRFERVPELG---WVFIYNIKEDKQGNLWLATYIDGVYKRNVRTGEWEHYMHDE 520
E + + I G +W T G+++ ++
Sbjct: 164 LITKENKIIASARAFDDGEDILCHTIFCGSDGRIWCGTN-RGLFEVKIKADRIMLSRTTA 222
Query: 521 TNPSSLPSNKVLSIFEDSQNQLWFTTQGGG--FCRFDPSGKIFVRYDSSIGLPSNVVHRI 578
P L K+ SI D+ + WF + GG C + GK F+ LP H+I
Sbjct: 223 ELPVFLQKEKITSIKMDNNGRFWFGSYAGGLLLCHYQ-QGK-FIEAQQQPALPGGATHKI 280
Query: 579 EE-----DEKGLFWITTNKGLVHFNPKTLE-FKVYTIANGLLS-NQFNYQSSYKDKNGRI 631
D K + T GL F+ L F++ + A S + + S ++ ++G I
Sbjct: 281 RSIISLLDHK--ISVATADGLFFFDINNLNTFELTSKAGDEQSLHNSSIHSLFQQRSGTI 338
Query: 632 YFGS 635
+ GS
Sbjct: 339 WIGS 342
Score = 43.1 bits (100), Expect = 2e-07
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 466 HSETNRFERVPELGWVFIYNIKEDKQGNLWLATYIDGVYKRNVRTGEWEHYMHDETNPSS 525
H NR + GW+ + + + G + N + H+ ++
Sbjct: 6 HLNLNRKCAIRAAGWIGM------------MCLLLCGALQVNAQLSVSTHFSTED----G 49
Query: 526 LPSNKVLSIFEDSQNQLWFTTQGGGFCRFDP-SGKIFVRYDSSIGLPSN--VVHRIEEDE 582
L N VLSI +D Q +WF T+ G RFD + F PS+ ++ + D+
Sbjct: 50 LVQNNVLSIAQDRQGFMWFGTE-NGLSRFDGLRWRSFKNILGDTNKPSSPALIRSLFWDQ 108
Query: 583 KGLFWITTNKGLVHFNPKTLEFKVYTIANGLLSNQFNYQSSYKDKNGRIYFGSINGFI 640
+ W+ T GL+ F+P T +F+ + + Q + +D +G I G+ G +
Sbjct: 109 QNRLWMGTALGLITFDPLTEKFRQIKLPYPI---QPEVKQVTRDLSGNILAGTTAGIV 163