Pairwise Alignments

Query, 1326 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1374 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  560 bits (1442), Expect = e-163
 Identities = 399/1384 (28%), Positives = 670/1384 (48%), Gaps = 100/1384 (7%)

Query: 10   LIVFIFHTFYVFAD-------------LNEGYAFRSLDINNGLSQNTVHAILQDKQGFMW 56
            L  FI H F +F               L   Y  ++  IN GL   +  A L+DK+GF+W
Sbjct: 6    LTCFILHFFLLFTHVKAQELRTNNQPVLTGHYVIKTYGINEGLPSKSTTAALKDKRGFIW 65

Query: 57   FGTKDGLDRYDGISFRAFMKESG---TLGNNFITSLYEDQQGQIWIGTDVGLYVYSPEHE 113
             GT++GL ++DG +F+ ++  +G   +L NN+I ++ ED+ G  W+GT  GL  + P  E
Sbjct: 66   VGTENGLCKFDGYAFKIYVNITGDTTSLTNNYINAVVEDKNGVFWVGTMNGLNKFDPVTE 125

Query: 114  TVERFIMKSDLDTGIDYT-VNLVTGDKDGGIWVVTQSQAVFYYNPQTNKLINYLSD--QS 170
              ERF  K +  T +    +  +  D+   +WV T       +N  +N    Y  D    
Sbjct: 126  KFERFYHKENNRTSLSNNKIWSLLIDRTNKLWVGTDD-GFNLFNKNSNAFTVYQPDFKDP 184

Query: 171  GRLKFGSLGQLYFDSDNVCWLDIRDGNLYFSKDKLQTLVPVFPKDGNEPFKGEY----IC 226
              +K  S+  +  D     WL    GN     +K       F     +   GE     I 
Sbjct: 185  DAIKGKSVNAIAEDKAGNLWL----GNWSKGLNKFDKKTKSFKNYTQKEVAGEKNPNDIW 240

Query: 227  KLLPGPYNCMYVGTIT--GLKEVNLTNKTVRTLLSKDESGDDIYVREIAFYSDDELWAGT 284
             L       +++G+     L   +  +++  T  SK      I+   +     ++L  G 
Sbjct: 241  TLCLDADGMIWIGSYWKGDLFRFDPKSESFTTYASKGTGNASIF--SVLNLGTEKLLVGG 298

Query: 285  ESGLYIYNLRTKKTVHLRNVSGDPYSISDNAIYSICKDREGGIWI--GSYFGGVNYYPKQ 342
             +G++  N +  K   +  +       ++  +Y   +D+ G IWI   + F  +++   +
Sbjct: 299  SAGVFWVNTKLNKWEKIEELE----FFANGGLY---RDKSGMIWICGKNGFSKIDFNQYK 351

Query: 343  YTYFDKVYPRTEIDEMGKRVREFCADHDGTLWIGTEDKGLFHYYPSTGLIEPFRHPDIYH 402
            + +    + + EI  +    ++F        W+GT +KGLF Y P    +   +H    +
Sbjct: 352  FNFISLPFGQAEIKSIISYGKDF--------WVGT-NKGLFKYNPDNHAVSKLQHTGNPN 402

Query: 403  NVHG-----LCLD-GNYLWVGHFAKGLNRIDLRTHAVKHYFDAP-------NDIF-SICR 448
            ++       L  D  N LWV     G +R D + +   H+            D+F  +  
Sbjct: 403  SLSSSEIINLSTDLKNRLWVMG-ENGFDRYDEKANKFIHHHHRSALGSFFNEDVFRDLIE 461

Query: 449  TTSGNLWLGTTAGLFRYHSETNRF-------ERVPELGWVFIYNIKEDKQGNLWLATYID 501
              +   +L T AGL  Y+ +TN +       +    L    +Y + +D QGN+W+ TY  
Sbjct: 462  VNADEYYLATDAGLKVYNDKTNSYTHYFNDPKNQASLSNNHLYCLLKDAQGNVWIGTYGS 521

Query: 502  GVYKRNVRTGEWEHYMHDETNPSSLPSNKVLSIFEDSQNQLWFTTQGGGFCRFDPSGKIF 561
            G+ + N +T ++ +YM + +    + +N V S++ DS   +W  T+ G   ++      F
Sbjct: 522  GLSRFNPKTRKFSNYMINNSKRGGISNNIVNSLYLDSHQNVWVCTRDG-LNKYIAKTNTF 580

Query: 562  VRYDSSIGLPSNVVHRIEEDEKGLFWITTNKGLVHFNPKTLEFKVYTIANGLLSNQFNYQ 621
              Y    G  SNV   + ED  G  W+TT +G+  F+P +   K Y   +G+ +N     
Sbjct: 581  EIYSKQNGFASNVFTDLVEDNNGRLWVTTEQGISLFDPVSKMVKNYDEKDGVYANA---- 636

Query: 622  SSYKDKNGRIYFGSINGFISFEPSVFVDNDFLPPVVITDFMLFNKKVPVGSTDSPLKQSI 681
            +  K+  G IY     G + F P +   N   P V  +DF +FNK +  G  DSPLK  +
Sbjct: 637  AICKNAKGEIYLAGSKGIVYFNPQLLKYNKTAPAVYFSDFSIFNKLILPGD-DSPLKLPV 695

Query: 682  TLSDYLELQSNQNSFSFSVAALSYQSPDMNTVLYKLEGYDSEW-YSVGKNLITYSNLPYG 740
             ++  + L  +Q+  SF   AL+Y   + N   Y LEG+D +W YS  ++ +TY+NL  G
Sbjct: 696  YMTREITLPYSQSVLSFGFVALNYTLSEKNKYAYFLEGFDKKWNYSGSEHKVTYTNLNPG 755

Query: 741  TYVLKVKAANSDGIWNPDVRTLKIRILPPFYLSVWAYIIYVILILGALFATFFYFRKRAV 800
             YVLKV+A+N+DGIWN +  ++ I I PP+Y + WA+ IY +   G ++A   Y   RA 
Sbjct: 756  KYVLKVRASNNDGIWNMEGNSIGITITPPWYRTWWAFCIYGLTFFGMIYAYLKYREHRAN 815

Query: 801  EKHQRAMEKFEQEKERELYTSKIEFFTNVAHEIRTPLTLIKSPLESVLTEKELPENVKM- 859
             + Q  +   E EKE+EL   K+ FFTNV+HE RTPLTLI +P++ +L + +  +NV   
Sbjct: 816  LEFQVKLAHVESEKEKELSEKKLSFFTNVSHEFRTPLTLIINPVKELLYKND--KNVDTT 873

Query: 860  ELEIMDQNAERLLNLTNQLLDFRKTENKGFKLNPVECSVGSIIRSVYKRFTTLVNQKGIE 919
            +L I+ +NA+RLL+L +QLL FRK +  G KL     ++ S+ + V+  F      K I 
Sbjct: 874  DLNIVYRNAKRLLSLVDQLLLFRKADTYGEKLKVAPVNLVSLCKEVFLCFVHQARSKNIV 933

Query: 920  LKVEIPEEELLASVDKEALTKILSNLFTNALKYAQTYAYLSLSVDEAGKEFTIVMSNDGK 979
            L     +E +    D+E +  +  NL +NA+K+      + + V   G++  + + + G 
Sbjct: 934  LDFIGTDEVIPFYADREKIEIVFFNLLSNAIKFTPEGGTVKMIVGNRGEDIQVGIEDTGC 993

Query: 980  IIPIEMRENIFRPFVQYRDGKDIVPGTGIGLALARSLAELHQGTLTMDQDMECNRFILSI 1039
             I     E ++  F Q    K    G GIGL LA++  E+H GT+      E    I +I
Sbjct: 994  GITTVAGEKLYEKFYQDPGNKSAKGGFGIGLYLAKNFIEMHGGTINYTST-ENKGTIFNI 1052

Query: 1040 PIR----HQTASDVLEEEHRE------KPVYDEEDNETRIMPSDKDKK-------EVASV 1082
             +R    H   + +L+E   +      K + ++E    +I+ + ++         ++ ++
Sbjct: 1053 SLRRGISHFKDAVILQEALVDTDSSLFKELIEDEITANKIVEAAEEPLIDSQLALDLKTL 1112

Query: 1083 LIVEDNKDMLAFVARQLSPLYHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLELCE 1142
            LI++DN ++  ++ +     YH+  A NG +   +++    ++VI D+MM  + G+ELC 
Sbjct: 1113 LIIDDNIEIREYLKQVFRMDYHLYEAGNGEDGYDMVKELLPDIVICDVMMDGITGIELCS 1172

Query: 1143 HLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSNRERL 1202
             +K ++  SHIPIILLTA +  E K++G+E GAD YI KPF  ++L+  VA++L ++  L
Sbjct: 1173 KIKEDVAVSHIPIILLTAISAPEVKLKGIEGGADDYISKPFDKDFLKARVASILKSKNAL 1232

Query: 1203 RRRFIESPFIKADTMAQTKADEVFIQKLNEYVSQHLDNTDLVIDDMAEAMNMGRSNFYRK 1262
            +R F     + ++    +   + F+      V +HL + D  ID +   + M RSN YRK
Sbjct: 1233 QRYFYNEITLNSNNTKISAEYKEFLDHCIRIVEEHLIDPDFNIDTLTATIGMSRSNLYRK 1292

Query: 1263 LKGVLDMSPNEYLRLIRLKKAAQLLKDGRYGIVEISYMVGFNSPSYFSNCFKKQFGVLPK 1322
            +K +   S N ++R IRL+KAA++  +    I E SYMVG N P YF   F + F + P 
Sbjct: 1293 IKSISGQSANGFIRFIRLRKAAEIFINTDKTIQETSYMVGINDPKYFREQFYRLFNMNPS 1352

Query: 1323 DFMQ 1326
             +++
Sbjct: 1353 QYIK 1356