Pairwise Alignments

Query, 319 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 293 a.a., recombinase XerD from Azospirillum brasilense Sp245

 Score =  176 bits (445), Expect = 8e-49
 Identities = 112/282 (39%), Positives = 160/282 (56%), Gaps = 9/282 (3%)

Query: 33  NTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIGIH---PRSQARILSGIK 89
           NT  AY  DL  L  +L   G  + +    DL+ + A  +  G     PR+ AR LS ++
Sbjct: 2   NTRMAYERDLADLALWLAQRGQPLEKAVTEDLRAYLAFQYVEGGQKPAPRTLARRLSAMR 61

Query: 90  SFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD-RSKAEGQRNRAIL 148
            F+RFL+       DP+  L+ PK G  LP++LTVEE+  +I S   R   EG R  A+L
Sbjct: 62  QFYRFLVSEGRRADDPASALDSPKQGRPLPKILTVEEVTRMIDSAQTRGGPEGLRLVALL 121

Query: 149 ETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAINEIKLYFLDRNR- 207
           E LY+ GLRVSELV L ++ +  D   + V GKG K+R+VP+S  A   + +Y   R+  
Sbjct: 122 EVLYATGLRVSELVGLPMAAILRDGRGLIVRGKGGKERMVPLSEPASAALNVYLPWRSHF 181

Query: 208 IEVKKDYEDFVFVSQRRGKS---LSRIMIFHMIKELAQNAGIT-KNISPHTFRHSFATHL 263
           I   ++     F+   R  +   L+R     ++KELA  + I  + +SPH  RH+FATHL
Sbjct: 182 ILAGRENGPVAFLFPSRSSTNGHLTRQRFAQLLKELAIESNIDPEKVSPHVLRHAFATHL 241

Query: 264 LEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305
           L+ GA+LR++Q MLGH  IATT+IYTH+    L+  + EHHP
Sbjct: 242 LDRGADLRSVQKMLGHADIATTQIYTHVVSERLKQVVHEHHP 283