Pairwise Alignments

Query, 319 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (535), Expect = 3e-59
 Identities = 113/291 (38%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIG 75
           +I  +   L   K LS +TL AY +DL     +L  +G  +L    ++++ + A   + G
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72

Query: 76  IHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD 135
               S AR+LS ++ F+++L+    +E DP  +++ PK+  KLP+ L+  ++D ++S  +
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 136 RSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195
           R      R+RA+LE LY+ GLRVSELV L L  +   +G +++ GKGSK+RLVP   +A 
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 196 NEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTF 255
            EI+ Y L   R E+ K     V    +RG  ++R   +H IK  AQ AGI  ++SPHT 
Sbjct: 193 AEIEDY-LKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTL 251

Query: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPR 306
           RH+FATHLL  GA+LR +Q +LGH  ++TT+IYTH+ +  L      HHPR
Sbjct: 252 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302