Pairwise Alignments

Query, 319 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 306 a.a., recombinase XerD from Cupriavidus basilensis FW507-4G11

 Score =  176 bits (447), Expect = 5e-49
 Identities = 108/293 (36%), Positives = 167/293 (56%), Gaps = 4/293 (1%)

Query: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGI-DVLEVCLSDLQRFAAGLHDI 74
           ++ ++   L LE  L+ NT+DAY  DL  L  +L   G   +L V  + L  + A  H +
Sbjct: 15  LVDRFCDALWLEDGLAQNTIDAYRRDLALLSRWLHASGTCALLAVDDTALNGYFASRH-L 73

Query: 75  GIHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSV 134
                S  R L+  K FF++ +    + ADP  LL   K   + P+ LT  +++ ++ + 
Sbjct: 74  ATRASSANRRLTVFKRFFQWALREHMITADPCLLLRPAKQPPRFPKTLTEAQVEALLETP 133

Query: 135 DRSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEG-KGSKQRLVPISPR 193
           D +   G R+R +LE +Y+ GLRVSEL  +K  ++  +EG  +V G KG+K+RLVP    
Sbjct: 134 DTATPLGLRDRTMLELMYASGLRVSELTQMKTIEISLNEGVARVVGGKGNKERLVPFGTE 193

Query: 194 AINEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPH 253
           A + ++ Y  +     + +   + +FV+QR G+ ++R   +H+IK  A+ A I   +SPH
Sbjct: 194 AGDWLRRYLAEGRPALLGERACEALFVTQR-GEGMTRQAFWHLIKRHAREAEIYAPLSPH 252

Query: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPR 306
           T RH+FATHLL  GA+LR +Q +LGH  I+TT+IYTH+ R  LR     HHPR
Sbjct: 253 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQHHHPR 305