Pairwise Alignments

Query, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 831 a.a., DNA topoisomerase I (EC 5.99.1.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  594 bits (1532), Expect = e-174
 Identities = 350/793 (44%), Positives = 478/793 (60%), Gaps = 69/793 (8%)

Query: 1   MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDVDKNFKPDYEIPADK 60
           M K+L+IVESPAKAKTI K+LGKDF VL+SYGH+RDL  KE ++D D  F   Y++    
Sbjct: 1   MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN 60

Query: 61  KALVSTLKAEAKEAETVWLASDEDREGEAIAWHLYEVLK----LKPENTKRIVFHEITKG 116
           +  V  +   AK A+ ++LA+D DREGEAI+WH+ E+LK    LK +  +R+VF EIT  
Sbjct: 61  EKHVEAIARAAKSADDIYLATDPDREGEAISWHIAEILKERGLLKDKTMQRVVFTEITPR 120

Query: 117 AILKAIEQPRNIDLNLVNAQQARRILDRIVGFELSPVLWRKVKPSLSAGRVQSVAVRLIV 176
           AI +A+ +PR I  +LV+AQQARR LD +VGF LSPVLWRKV+  LSAGRVQS A+R+IV
Sbjct: 121 AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180

Query: 177 EREREIHAFKSEAAYRVIAIFLVPDT--DGKLVEMKAELSRRIK-----TKEEAKAFLDA 229
           ERE EI AF +   + + A    P    + +L+++  +   +       T E A+  +  
Sbjct: 181 EREEEIEAFIAREYWSIDAHCRHPSQPFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ 240

Query: 230 CKGATFTIEDITTRPVKKTPPAPFTTSTLQQEAARKLGYTVAQTMMIAQRLYES------ 283
                  + D+ ++  K+ P  PFTTSTLQQEA+RKLG+T  +TM +AQ+LYE       
Sbjct: 241 AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE 300

Query: 284 ---GFITYMRTDSVNLSEYATASSKDAIIQMMGERYV--HPRHFETKTKGAQEAHEAIRP 338
              G I+YMRTDSVNLS+ A A  +D I +  G   +   P  + TK+K AQEAHEA+RP
Sbjct: 301 GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP 360

Query: 339 TYMENQSIEGTAQ--------EKKLYDLIWKRTIASQMADAELEKTTATISISKSGDAFT 390
           T     ++   AQ        E++LY+LIW+R +A QM  A L   +  +S   S   F 
Sbjct: 361 T----SALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAG-SEHVFR 415

Query: 391 AIGEVIKFDGFLRVYRESYDDEN-EQEDESRLLPPLKKGQKLEYGPIVATERFTQRPPRY 449
           A G  +   GFL VY E  D ++ E EDE R LP +K G  +    IV  + FTQ PPR+
Sbjct: 416 ASGTTVVVAGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQHFTQPPPRF 475

Query: 450 TEASLVRKLEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVLTLKDNQIKDESH 509
           TEA+LV+ LEE GIGRPSTYA  I T+Q R+YVE      E R+F               
Sbjct: 476 TEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEM-----EGRSFR-------------- 516

Query: 510 NEVTGAEKSKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIAEGEVKWTSIMKT 569
                       PTD G  V+ FL+ +F   +DY+FTA++E + D ++ GE +W  +M+ 
Sbjct: 517 ------------PTDVGRAVSKFLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEK 564

Query: 570 FYDQFHPAVE-KTLSIKTEHKVGERMLGEEPETGKPVSVKIGRFGPVVQIGAADDEEKPR 628
           F+  F   VE K  S+        R+LG +P +GK VS +IGRFGP+VQIG  +DE+KP 
Sbjct: 565 FWGPFKELVEDKKDSLDKTDAGSVRVLGADPVSGKEVSARIGRFGPMVQIGTVEDEDKPT 624

Query: 629 FAQMKKGQSMETITLEEALELFKLPRTLGEYEGKTVTVGIGRFGPYIQHNKVYVSLPKTL 688
           FA ++ GQS+ +I++E+ALELFK+PR LG+ + + V+VGIGRFGP+ +   VY SL K  
Sbjct: 625 FASLRPGQSIYSISIEDALELFKMPRALGQDKDQDVSVGIGRFGPFARRGSVYASLKKED 684

Query: 689 DPMKVTLEEAEQLILEKRTKEAERHIKKFDEEPELEILNGRYGPYIAYKGNNYKIPKDIV 748
           DP  + L  A  LI EK      R IK+FD   ++++LNGR+GPYI+    N KIPKD  
Sbjct: 685 DPYTIDLARAVFLIEEKEEIARNRVIKEFDGS-DIQVLNGRFGPYISDGKLNGKIPKDRE 743

Query: 749 PQDLSLKSCFDLI 761
           P  L+ +    L+
Sbjct: 744 PASLTFEEVQQLL 756



 Score = 36.2 bits (82), Expect = 7e-06
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 661 GKTVTVGIGRFGPYIQHNKV-------YVSLPKTLDPMKVTLEEAEQLILEKRTKEAERH 713
           GK V+  IGRFGP +Q   V       + SL        +++E+A +L    R       
Sbjct: 598 GKEVSARIGRFGPMVQIGTVEDEDKPTFASLRPGQSIYSISIEDALELFKMPRALGQ--- 654

Query: 714 IKKFDEEPELEILNGRYGPYIAYKGNNY-KIPKDIVPQDLSLKSCFDLIKIQDE 766
               D++ ++ +  GR+GP+ A +G+ Y  + K+  P  + L     LI+ ++E
Sbjct: 655 ----DKDQDVSVGIGRFGPF-ARRGSVYASLKKEDDPYTIDLARAVFLIEEKEE 703