Pairwise Alignments

Query, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 870 a.a., DNA topoisomerase I from Pseudomonas syringae pv. syringae B728a

 Score =  409 bits (1051), Expect = e-118
 Identities = 250/658 (37%), Positives = 365/658 (55%), Gaps = 84/658 (12%)

Query: 1   MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDL----------------------- 37
           M K+LVIVESPAKAKTI K+LG  + V SS GHIRDL                       
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKDPAAKRGKAAAGE 60

Query: 38  ------KKK-------EFSIDVDKNFKPDYEIPADKKALVSTLKAEAKEAETVWLASDED 84
                 K+K          +D +  +K  YEI   K+ ++  L+  AK+A+ ++LA+D D
Sbjct: 61  GPVLTPKEKAQRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADIIYLATDLD 120

Query: 85  REGEAIAWHLYEVLKLKPENTKRIVFHEITKGAILKAIEQPRNIDLNLVNAQQARRILDR 144
           REGEAIAWHL E +       KR+VF+EITK AI +A  +P  +D+  VNAQQARR LDR
Sbjct: 121 REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR 180

Query: 145 IVGFELSPVLWRKVKPSLSAGRVQSVAVRLIVEREREIHAFKSEAAYRVIAIFLVPDTDG 204
           +VG+ +SP+LW+KV   LSAGRVQSVAV+L+VEREREI AF  E  + + A         
Sbjct: 181 VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN 240

Query: 205 KLVEMKAELSRRIKTKEEAKAF--LDACKGATFTIEDITTRPVKKTPPAPFTTSTLQQEA 262
              E+  E     K   E +A   L+  K ++++I     +P    P APF TSTLQQ A
Sbjct: 241 VRFEVARENGEAFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA 300

Query: 263 ARKLGYTVAQTMMIAQRLYESGFITYMRTDSVNLSEYATASSKDAIIQMMGERYV--HPR 320
           + +LG+ V +TMM+AQRLYE+G+ITYMRTDS NLS  A + ++D I    G++Y+   P 
Sbjct: 301 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIGTEFGKKYLPESPN 360

Query: 321 HFETKTKGAQEAHEAIRPTYMENQSIEGTAQEK---KLYDLIWKRTIASQMADAELEKTT 377
            + +K +GAQEAHEAIRP+ +     + T  E+   +LY+LIW++ +A QM  A+   TT
Sbjct: 361 VYSSK-EGAQEAHEAIRPSDVNTHPSKLTGMERDAERLYELIWRQFVACQMLPAQYLSTT 419

Query: 378 ATISISKSGDAFTAIGEVIKFDGFLRVYRESYDDENEQEDESRLLPPLKKGQKLEYGPIV 437
            T++ S       A G ++KFDG+ R   +       +  +  +LP + +G+ L+   + 
Sbjct: 420 VTVAASDF--ELRAKGRILKFDGYTRALPQM-----AKPGDDDVLPDMAQGETLKLNKLD 472

Query: 438 ATERFTQRPPRYTEASLVRKLEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVL 497
            ++ FT+ P RY+EASLV+++E+ GIGRPSTYA  ISTIQ R YV   N+          
Sbjct: 473 PSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNR---------- 522

Query: 498 TLKDNQIKDESHNEVTGAEKSKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIA 557
                                + +    G +V   L+E F +++DY FTA +E+  D++A
Sbjct: 523 ---------------------RFYSEKMGDIVTGRLSESFSNLMDYGFTAGMEENLDDVA 561

Query: 558 EGEVKWTSIMKTFYDQFHPAVEKTLSIKTEHKVGERMLGEEP--ETGKPVSVKIGRFG 613
           +GE  W +++  FY  F   +E   +     +  + ++ + P    G+P+ ++    G
Sbjct: 562 QGERDWKNVLDEFYGDFRKKLEVAEAADGGMRANQPVMTDIPCKVCGRPMQIRTASTG 619