Pairwise Alignments

Query, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 911 a.a., type I DNA topoisomerase from Rhodopseudomonas palustris CGA009

 Score =  517 bits (1331), Expect = e-150
 Identities = 338/886 (38%), Positives = 470/886 (53%), Gaps = 141/886 (15%)

Query: 4   NLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDVDKNFKPDYEIPADKKAL 63
           NLVIVESPAKAKTI K+LG  ++VL+S+GH+RDL  K  S+D D +F+  +E+     + 
Sbjct: 2   NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAASR 61

Query: 64  VSTLKAEAKEAETVWLASDEDREGEAIAWHLYEVLK----LKPENTKRIVFHEITKGAIL 119
           ++ +    K A+ + LA+D DREGEAI+WH+ EV+K    LK +  +R+VF+ ITK ++ 
Sbjct: 62  LNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQQVERVVFNAITKQSVT 121

Query: 120 KAIEQPRNIDLNLVNAQQARRILDRIVGFELSPVLWRKVKPSLSAGRVQSVAVRLIVERE 179
            A++ PR ID  LV+A  ARR LD +VGF LSPVLWRK+  + SAGRVQSVA+RL+ +RE
Sbjct: 122 DAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRE 181

Query: 180 REIHAFKSEAAYRVIAIFLVP---DTDGKLVEMKAELSRR--IKTKEEAKAFLDACKGAT 234
            EI  F     + +IA    P     + +LV    +  +R  I T  EA+ F  A + A 
Sbjct: 182 TEIEKFVPREYWSLIATMATPRGETFEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAAN 241

Query: 235 FTIEDITTRPVKKTPPAPFTTSTLQQEAARKLGYTVAQTMMIAQRLYES--------GFI 286
           F +  +  +P ++ P APFTTSTLQQEA+RKLG+  A TM +AQRLYE         G I
Sbjct: 242 FRVATVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGLI 301

Query: 287 TYMRTDSVNLSEYATASSKDAIIQMMGERYV--HPRHFETKTKGAQEAHEAIRPTYMENQ 344
           TYMRTD V +   A   ++  I +  G  YV   PR +  K K AQEAHEAIRPT +  +
Sbjct: 302 TYMRTDGVQIDSSAITQARKVIAEDFGNAYVPDAPRQYTAKAKNAQEAHEAIRPTDLSRR 361

Query: 345 SIEGT----AQEKKLYDLIWKRTIASQMADAELEKTTATISISKSGD---AFTAIGEVIK 397
             + +    + + +LY+LIW RT+ASQM  AELE+TT  I  +K+G       A G+V+K
Sbjct: 362 PSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIE-AKAGSRVLELRATGQVVK 420

Query: 398 FDGFLRVYRESYDDENEQEDESRLLPPLKKGQKLEYGPIVATERFTQRPPRYTEASLVRK 457
           FDGFL  Y+E  DD++E ED SR LP + + + L+   +  T+ FT+ PPR++EASLV++
Sbjct: 421 FDGFLAAYQEGRDDDSEDED-SRRLPAMSENEALKREALAVTQHFTEPPPRFSEASLVKR 479

Query: 458 LEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVLTLKDNQIKDESHNEVTGAEK 517
           +EELGIGRPSTYA  +  ++ R YV                                 EK
Sbjct: 480 MEELGIGRPSTYASILQVLKDRGYVR-------------------------------LEK 508

Query: 518 SKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIAEGEVKWTSIMKTFYDQFHPA 577
            +L   D G VV  FL  +F   ++Y+FTA +E++ D I+  EV W  ++  F+  F  A
Sbjct: 509 KRLHGEDKGRVVVAFLESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWRDFIGA 568

Query: 578 VE--KTLSIKTEHKVGERMLGE----------EPE------TGKPVSVKIGRF------- 612
           V+  K L +     V + MLG           +P       TGK +++K G+F       
Sbjct: 569 VDEIKDLRVAQVLDVLDEMLGPHIYPAREDGGDPRQCPSCGTGK-LNLKAGKFGAFVGCS 627

Query: 613 ----------------------------------------GPVVQIGAADD---EEKPRF 629
                                                   GP +Q+G A D    EKP+ 
Sbjct: 628 NYPECRYTRPLASDSAGDADRVLGTDPDSGLEVAVKSGRFGPYIQLGEAKDYAEGEKPKR 687

Query: 630 AQMKKGQSMETITLEEALELFKLPRTLGEY--EGKTVTVGIGRFGPYIQHNKVYVSLPKT 687
           A + KG S   + LE AL+L  LPR +G++   G+ +  GIGRFGPY+QH K Y SL   
Sbjct: 688 AGIPKGTSPSDVDLEMALKLLALPREVGKHPETGQPIKAGIGRFGPYVQHEKTYASLEAG 747

Query: 688 LDPMKVTLEEAEQLILEKRTKEAERHI------KKFDEEPEL---EILNGRYGPYIAYKG 738
            D   + L  A  LI EK  K   +        K   + P L    +  GRYG Y+   G
Sbjct: 748 DDVHTIGLNRAVTLIAEKVAKGPSKGRFGSDPGKALGDHPSLGAVAVKKGRYGAYVTAGG 807

Query: 739 NNYKIPKDIVPQDLSLKSCFDLIKIQDEKGPGTSAK--GKRTAKKK 782
            N  IP D     ++L     L+  +  KG G + K   K+ A KK
Sbjct: 808 VNATIPNDKTEDTITLPEAIALLDERAAKGGGKAKKAPAKKAAAKK 853