Pairwise Alignments

Query, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 833 a.a., DNA topoisomerase I from Dyella japonica UNC79MFTsu3.2

 Score =  607 bits (1566), Expect = e-178
 Identities = 361/813 (44%), Positives = 489/813 (60%), Gaps = 66/813 (8%)

Query: 1   MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDVDKNFKPDYEIPADK 60
           M KNL+IVESPAKAKTI K+LGKDF+VL+SYGH+RDLK KE ++D D  F   YEI    
Sbjct: 1   MAKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDPDHGFAMAYEIIERN 60

Query: 61  KALVSTLKAEAKEAETVWLASDEDREGEAIAWHLYEVLK----LKPENTKRIVFHEITKG 116
           +  V  +   A+ A+ ++LA+D DREGEAI+WH+ E+L+     K +   R+VF EIT  
Sbjct: 61  QKHVDAIARAAQVADDIYLATDLDREGEAISWHISEILQQRGLTKGKQLHRVVFSEITPK 120

Query: 117 AILKAIEQPRNIDLNLVNAQQARRILDRIVGFELSPVLWRKVKPSLSAGRVQSVAVRLIV 176
           AI  A+ QPR +  +LV+AQQARR LD +VGF LSPVLWRKV+  LSAGRVQS A+R+IV
Sbjct: 121 AIKAAVAQPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180

Query: 177 EREREIHAFKSEAAYRVIAIFLVPDTD--GKLVEMKAELSRRIKTKEE-----AKAFLDA 229
           ERE EI AF +   + V A    P+ D   +L  +  +   +     E     A+A L  
Sbjct: 181 EREEEIEAFVAREYWSVEAALRHPEGDFSARLTRLYGKKFEQFDLTNEADAMAARAALKE 240

Query: 230 CKGATFTIEDITTRPVKKTPPAPFTTSTLQQEAARKLGYTVAQTMMIAQRLYES------ 283
                 T+ D+ ++  K+ P  PFTTSTLQQEAARKLG++ ++TM +AQ LYE       
Sbjct: 241 AAHGRLTVSDVGSKERKRRPAPPFTTSTLQQEAARKLGFSTSRTMKVAQGLYEGVSLGSE 300

Query: 284 ---GFITYMRTDSVNLSEYATASSKDAIIQMMGERYV--HPRHFETKTKGAQEAHEAIRP 338
              G ITYMRTDSV LSE A    +  I +  G + +  HP+ +++K+K AQEAHEAIRP
Sbjct: 301 GNVGLITYMRTDSVALSEDAVGELRQLIARDYGNKALPDHPQVYKSKSKNAQEAHEAIRP 360

Query: 339 TYMENQSIEGTA----QEKKLYDLIWKRTIASQMADAELEKTTATISI--SKSGDA-FTA 391
           T       E  +    +++KLY+LIWKRT+A QM  A L   +   ++  ++ G+A F +
Sbjct: 361 TSAMYTPREVASFLNDEQRKLYELIWKRTVACQMIHATLNTVSVDFALPHAQGGEAGFRS 420

Query: 392 IGEVIKFDGFLRVYRESYDDEN-EQEDESRLLPPLKKGQKLEYGPIVATERFTQRPPRYT 450
            G  +   GFL VY E  D ++ E +DE R LP L+KG+++    I+A + FT+ PPRY+
Sbjct: 421 TGTTVVDPGFLAVYEEGRDQKSAEDDDEGRRLPRLEKGEQVALHDILADQHFTEPPPRYS 480

Query: 451 EASLVRKLEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVLTLKDNQIKDESHN 510
           EASLV+ LEE GIGRPSTYA  I  +  REYV                L D++       
Sbjct: 481 EASLVKSLEEHGIGRPSTYASIIQVLLNREYV----------------LLDSR------- 517

Query: 511 EVTGAEKSKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIAEGEVKWTSIMKTF 570
                   +  PTD G  V+ FLT++F   +DY+FTA +E E D ++ GE  W  +M+ F
Sbjct: 518 --------RFKPTDVGRAVSKFLTQHFTRYVDYDFTAKLEDELDAVSRGEEAWVPLMERF 569

Query: 571 YDQFHPAV-EKTLSIKTEHKVGERMLGEEPETGKPVSVKIGRFGPVVQIGAADDEEKPRF 629
           +  F   V EKT ++      G R LG +P++GKPVSV++GR+GP  QIG  D +EK +F
Sbjct: 570 WQPFKQQVEEKTETVDRSEATGARELGNDPKSGKPVSVRLGRYGPYAQIGDKDTDEKLQF 629

Query: 630 AQMKKGQSMETITLEEALELFKLPRTLGEYE-GKTVTVGIGRFGPYIQHNKVYVSLPKTL 688
           A ++ GQSM TITLE+ALELFKLPR LG+ E G  V+VG+GRFGP+++    Y SL    
Sbjct: 630 ASLRPGQSMHTITLEDALELFKLPRKLGQAENGDEVSVGVGRFGPFVKQGSTYASLKAED 689

Query: 689 DPMKVTLEEAEQLILEKRTKEAERHIKKFDEEPELEILNGRYGPYIAYKGNNYKIPKDIV 748
           DP  + L  A Q++ EK    A R I+ F     +++LNGR+GPYI     N +IPKD  
Sbjct: 690 DPYTIELPRALQIVQEKLELLANRVIQDFGN--GVQVLNGRFGPYITDGEKNARIPKDQD 747

Query: 749 PQDLSLKSCFDLIKIQDEKGPGTSAKGKRTAKK 781
           P+ L+   C +L+     K  G     K  AKK
Sbjct: 748 PKTLTEAQCVELLAAAPVK-KGRGGARKAAAKK 779