Pairwise Alignments

Query, 604 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 853 a.a., DNA mismatch repair protein MutS from Pantoea sp. MT58

 Score = 65.9 bits (159), Expect = 7e-15
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 18/241 (7%)

Query: 366 AIGAIDAYCSLATFSYNHPDYIYPQITSQSFHLQAEALGHPLMN---RNKCVRNGIDMEK 422
           A+  +D   +LA  +++  +Y  P +  +   ++     HP++    +   + N + +  
Sbjct: 550 ALAELDVLSNLAERAWSL-NYCRP-VLQEKAGIKISGGRHPVVEQVLKEPFIANPLSLAP 607

Query: 423 RPFFIIITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEIFPA-RLVTSLRTSDSLTD 481
           +   +IITG NM GKSTY+R   +  L+A IG+ V A +  I P  R+ T +  +D L  
Sbjct: 608 QRRMLIITGPNMGGKSTYMRQAALIALMAWIGSFVPADETLIGPLDRIFTRVGAADDLAS 667

Query: 482 NESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMS-MDANG 540
             S F  E+     I+    A E   +++DEI +GT++ D    ++A  +   + + A  
Sbjct: 668 GRSTFMVEMTETANILH--NATENSLVLMDEIGRGTSTYDGLSLAWACAENLANRIKAMT 725

Query: 541 IIATHDLLLGTLIDAFPQNIRNYCFEADITNNELTFSYQMRSGVAQNMNACFLMKKMGIA 600
           + ATH   L TL +   + + N   +A    + + F + ++ G A         K  G+A
Sbjct: 726 LFATHYFELTTLPEKM-EGVVNVHLDAVEHGDTIAFMHSVQEGAAS--------KSYGLA 776

Query: 601 V 601
           V
Sbjct: 777 V 777



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 129 EHSLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSS 174
           +++L   +++T TP+G + L  W +  L +   I QRQE+I EL +
Sbjct: 290 DNTLAAVLDKTVTPMGSRMLKRWLHMPLRDARIINQRQESIAELQN 335