Pairwise Alignments

Query, 604 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 880 a.a., DNA mismatch repair protein MutS from Ralstonia sp. UNC404CL21Col

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 101/470 (21%), Positives = 188/470 (40%), Gaps = 59/470 (12%)

Query: 131 SLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIREL--SSELEFRQQFRLLG-- 186
           +LF  ++  +T +G + L +W +  L ++   + RQ+AI  L  S     R   R L   
Sbjct: 304 TLFSLLDTCATSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLGSDWQTLRATLRTLSDV 363

Query: 187 -------LLYKGKPSDTSEIKEWVNSPSDYRKHAFLRILPTAVGIINLLCIGATILGFLP 239
                   L   +P D S +++ +    + R+      LP +     L  + A +   LP
Sbjct: 364 ERITGRLALLSARPRDLSSLRDTLARLPEIREE-----LPQSDAAPLLTELYAALS--LP 416

Query: 240 ASISGIVFACFVVFSFIFSKGITKIQATYG---EKLQILSTYADQILIT-EKKEMHSPAL 295
                ++    +       +    I   Y    ++L+ +S    Q L+  E +E     +
Sbjct: 417 EDAHALLQRAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERERTGI 476

Query: 296 QQLKAELTS---------------------QNQTASQSVHRLAKLMNALDQRGNLLMSTI 334
             L+ E                        + QT   +   +   + A + +        
Sbjct: 477 ANLRVEYNRVHGFYIEVTNGQAAKVPDDYRRRQTLKNAERYITPELKAFEDKALSAQDRA 536

Query: 335 LNG--LLFWELRQVMQIEKWKEAHSADLPRWIEAIGAIDAYCSLATFSYNHPDYIYPQIT 392
           L+   +L+ EL Q +        H A+  R   A+   D   +LA  ++    +  P +T
Sbjct: 537 LSREKVLYEELLQKLL------PHLAEFKRIAAALAQADVLATLAERAHAL-SWSRPTLT 589

Query: 393 SQSFHLQAEALGHPLMNRN--KCVRNGIDMEKRPFFIIITGANMAGKSTYLRTVGVNYLL 450
                ++     HP++ +   + V N   +++    ++ITG NM GKST++R   +  LL
Sbjct: 590 DAP-GIELTRARHPVVEQQVEQFVANDCMLQEARKLLLITGPNMGGKSTFMRQTALVVLL 648

Query: 451 ACIGAPVWAAKMEIFPA-RLVTSLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFII 509
           A +GA V A    I P  R+ T +  +D L    S F  E+     I+   +A     ++
Sbjct: 649 AYVGAFVPAEAAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILH--RATPNSLVL 706

Query: 510 LDEILKGTNSMDKQKGSFALIKQFMSMD-ANGIIATHDLLLGTLIDAFPQ 558
           +DEI +GT++ D    ++A+ +  +S + ++ + ATH   L  L   F Q
Sbjct: 707 MDEIGRGTSTFDGLALAWAIARHLLSHNRSHTLFATHYFELTQLPQEFAQ 756