Pairwise Alignments

Query, 483 a.a., tetratricopeptide repeat family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 522 a.a., tetratricopeptide repeat protein from Rhodopseudomonas palustris CGA009

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 20/227 (8%)

Query: 103 QKNAGLASQKYEEAIYFDPSCTEAYLRYADIYK----SANAALAIEKLEQLKAQEPSNTA 158
           Q  + LA    + AI  +P    AY+  A+  K       A  ++ K  QL    P    
Sbjct: 252 QNQSLLALADEDMAIRLEPQHPLAYVNRAETLKLLGDKVAARASVTKALQLAPGFPPAVE 311

Query: 159 VDKKLAEIYYLKNDFSKAA-EAYSR--FAMGPTATEEDLVKYAFALFLNHDFEKSLEVAN 215
           V KKL E    K   S+AA EAY R  F +      E+ +K    +       +    AN
Sbjct: 312 VLKKLGEPKRSKEPSSEAAQEAYRRCTFPVTDLGPGEEGIKQIIKVCTLLVTAQGGSDAN 371

Query: 216 MGLKKNARHAAFNRLAMYNYTDLKRFDEAIKAADAFFTESDKAD-YSYLDYMYYGHLLEA 274
             L    R + + R   Y +  +             F+ES + D  S L Y   G+    
Sbjct: 372 RALVHLQRGSMYRRQGDYQHALID------------FSESLRYDPESALAYTGRGNAYRG 419

Query: 275 LKKYDEAVGQYEKAIQLDPTKTDLYKNISSAYEQKNDYKKAISAYQK 321
           LK  D+A+  + +AI+LDP     Y N  + +  KND  KAI+ + +
Sbjct: 420 LKLLDQALADHTEAIRLDPKYATAYNNRGNVWRDKNDLAKAIADFDR 466



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 20/243 (8%)

Query: 85  VNGKS-ALASVLEGDIAFEQKNAGLASQKYEEAIYFDPSCTEAYLRYADIYKSANAALAI 143
           ++GK+ A A +  G +   Q++   A    + AI  +P   +AY   A+ +  +      
Sbjct: 28  LSGKALAGAYIKRGFLRTRQRDLVGAEADLDAAIKANPDAADAYTTRANFWNVSG----- 82

Query: 144 EKLEQLKAQEPSNTAVDKKLAEIYYLKNDFS-------KAAEAYSR-FAMGPTATEEDLV 195
            K E+  A       +D  L   ++++           +A   YSR   + P  + E   
Sbjct: 83  -KPERALADADQAIKLDPNLPLAHFVRGSAELKLGHDDRAIADYSRAIELRPKESGEVYA 141

Query: 196 KYAFALFLNHDFEKSLEVANMGLKKNARHAAFNRLAMYNYTDLKRFDEAIKAADAFFTES 255
              FA     D  +++      LK            + N  D +R       A A ++E+
Sbjct: 142 VRGFAYHRKGDDIRAVADYTEALKAAPEDVG----TLLNRGDARRNLRDTAGAAADYSEA 197

Query: 256 DK-ADYSYLDYMYYGHLLEALKKYDEAVGQYEKAIQLDPTKTDLYKNISSAYEQKNDYKK 314
            K A  +   +   G +    +    AV  + +AI+L P+++ LY N +SA   +N    
Sbjct: 198 IKLAPGNAGGFKGRGFIRLLTQDTGGAVADFTEAIRLSPSESGLYLNRASALGLQNQSLL 257

Query: 315 AIS 317
           A++
Sbjct: 258 ALA 260



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 63  GEVYLKAGKLPEAQEYAALAKKVNGKSALASVLEGDIAFEQKNAGLASQKYEEAIYFDPS 122
           G +Y + G    A    + + + + +SALA    G+     K    A   + EAI  DP 
Sbjct: 380 GSMYRRQGDYQHALIDFSESLRYDPESALAYTGRGNAYRGLKLLDQALADHTEAIRLDPK 439

Query: 123 CTEAYLRYADIYKSAN-AALAIEKLEQLKAQEPS 155
              AY    ++++  N  A AI   ++  A  P+
Sbjct: 440 YATAYNNRGNVWRDKNDLAKAIADFDRAIAISPN 473