Pairwise Alignments

Query, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 638 a.a., DNA topoisomerase III from Pantoea sp. MT58

 Score =  184 bits (467), Expect = 1e-50
 Identities = 168/617 (27%), Positives = 281/617 (45%), Gaps = 66/617 (10%)

Query: 1   MIAILTDKPNVGKEIARILGA-HTREDGYMS-GNGYMVTWTFGNMLSLAMPKDYGMD--R 56
           M   + +KP++G+ IA +L   H R DG+++ GN  +VTW  G++L  A P  Y     R
Sbjct: 1   MRLFIAEKPSLGRAIADVLPKPHRRGDGFIACGNDQIVTWCVGHLLEQAQPDSYDSRYAR 60

Query: 57  PERGDFPINPAPFRLMVKHIKTDTGWIPDINAVLQLKVIEKVFDACESIIAATDASREGE 116
               D PI P  ++L            P  +   QLKV+E +      ++ A D  REG+
Sbjct: 61  WSLADLPIIPEKWQLK-----------PRPSVAKQLKVVEGLLAQASEVVHAGDPDREGQ 109

Query: 117 MVFRYLYRYL----ECRKSYRRLWISSLTDEAVLEGMDNLRPGSLYDHMFLAADSRNKAD 172
           ++   +  YL    E RK+ +R  I+ L  +AV   ++ LR    +  + ++A +R +AD
Sbjct: 110 LLVDEVLDYLNLSPEKRKNVQRCLINDLNPQAVDRAVNRLRENREFIPLCVSALARARAD 169

Query: 173 WVLGLNASYALC----QATGTGNNSLGRVQTPILAAISSRYRERENHIATDTFPVFISLC 228
           W+ G+N + A       A   G  S+GRVQTP+L  +  R  E EN +  D F V   + 
Sbjct: 170 WLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIENFVPKDYFEVKAHII 229

Query: 229 KNN------TLLKMRCTEEFTDREA--AARLYSD---CKLAGH-ARVTAVSRQVREIEPP 276
             +      + +     E + D E     R  +D    ++ G  A VTA S +      P
Sbjct: 230 TPDGTQFIASWIPSEACEPWQDEEGRLLKRALADHVVARITGQPATVTAYSDKRENEVAP 289

Query: 277 ALYNLTELQKDANNYYGMTAGKSLEIAQKLYE-KKLISYPRTAGRFLPRDVYDKLPRIME 335
             ++L+ LQ +A   YG++A   L+  Q+LYE  KLI+YPR+  R+LP + +     +++
Sbjct: 290 LPFSLSSLQIEAAKRYGLSAQTVLDTCQRLYETHKLITYPRSDSRYLPEEHFAGRHAVLK 349

Query: 336 KILNRKEFRPYVRSMGINIFDLPDKVVDEGQAAEHHAIIIT-DTYPEGLNREEMQLYMMI 394
            I   +  +  +   G    D  ++  D+ +   HHAII T  +    L+  E  +Y ++
Sbjct: 350 AI---QAHQSQLIPPGDFDADRRNRCWDDKKVDAHHAIIPTARSSAVKLSENEQNIYELV 406

Query: 395 IGRMLEAFMPVCRAEYTTVDAVCAARNFRCHACRIIEKGW---FGIFERESVIAGREYGF 451
             + L  F P        +D   A   F   A  + E GW    G  ER+      E   
Sbjct: 407 ARQYLMQFCPDSVFRKCVIDLDIAGGKFVAKARFLAEAGWRAMLGSKERD-----EENDG 461

Query: 452 SPIPQLENGETAAVTGCSLIHRKDLTVSAYTDAELITYMD-----------------TAG 494
            P+P +  G+        ++ ++      +TDA +++ M                  T G
Sbjct: 462 MPLPVVAKGDELLCERGEVLAKQTQPPRPFTDATILSAMTGIARFVQDKELKKVLRATDG 521

Query: 495 LGTAATRTGILQTLIDRKYVRYSGKYIIPTRKGLYIYETVRNMKIAETALTSGWEAQLAR 554
           LGT ATR GI++ L  R ++   G+YI  T  G  +  ++ ++  A   +T+ WE+ L R
Sbjct: 522 LGTEATRAGIIELLFRRGFLVKKGRYINSTDAGRALIHSLPDL-AARPDMTAQWESTLTR 580

Query: 555 MERGKLTQEEFMKGVLK 571
           +       +EFM+ +++
Sbjct: 581 ISEKACRYDEFMQPLVQ 597