Pairwise Alignments

Query, 708 a.a., polyribonucleotide nucleotidyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 716 a.a., polynucleotide phosphorylase/polyadenylase from Synechococcus elongatus PCC 7942

 Score =  539 bits (1388), Expect = e-157
 Identities = 323/705 (45%), Positives = 434/705 (61%), Gaps = 26/705 (3%)

Query: 13  DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFG 72
           DGR I LE G  A QA GSV++  G+T +L     +  A  G DF+PL V+Y+E+  A G
Sbjct: 11  DGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRST-AREGIDFLPLTVDYEERMYAAG 69

Query: 73  RFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGVDMPDALAG 132
           R PGGF +REGR  +   LT RL+DR LRPLFP     ++ V     S D    PD LA 
Sbjct: 70  RIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDVLAV 129

Query: 133 LAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVAATYDNIMMVEG 192
             AS A  V+ IPF GP++ VRV  +   F+INPT+ ++EK D+DL+VA T   ++MVE 
Sbjct: 130 TGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAGVIMVEA 189

Query: 193 EMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKREYNHEVN-DEELRKAVREA 251
             +++ EA+++EA+   +EA++   KAQ  L  E+G  +++      N D  L   VR+ 
Sbjct: 190 GANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELG--IEQILPEAPNADNTLENFVRDR 247

Query: 252 CYDKAYAVAASGNNNKHERFDAFDAIRE---EFKAQFSEEE-------LEEKAPLIDRYY 301
                  V    +  K ER  A D ++    E  A   EE+        E KA  +   +
Sbjct: 248 ASSGVQQVLQHFSFTKSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKA--LGNTF 305

Query: 302 HDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPL-PGPHGSAIFTRGETQSLTSVTL 360
             + K  MR+ IL +G R+DGRK  ++RPI  +VG L P  HGS +F RG TQ L+  TL
Sbjct: 306 KALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATL 365

Query: 361 GTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQIP 420
           GT  D + +D++    ++R+L HYN PP+S GE +  R  GRREIGHG LA RAL   +P
Sbjct: 366 GTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPVLP 425

Query: 421 A--DYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGEEK 478
           +  ++PYV+RVVSE+L SNGS+SM +VC  TLALMDAGV IKKPVSG AMGLI+   E  
Sbjct: 426 SKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDE-- 483

Query: 479 YAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538
           Y VL+DI G ED LGDMDFKV GT  GITA QMD+K+ GL  EI+  A+NQAK  R+HIL
Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHIL 543

Query: 539 DKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEETDG 598
           +K+ E IA PRADL  +APR+  + I  E IG VIGPGGK I+ + E+TGA I IE+T  
Sbjct: 544 NKMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDT-- 601

Query: 599 MGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLLHI 658
            G + +S  +      A  +I+ +      G+VY GKV  I+P GAF+EFLPGK+G++HI
Sbjct: 602 -GAVTISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHI 660

Query: 659 SEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLMP 703
           S+I   R+  VE+  +  GDE+ VK+ +ID K G+  L+RK + P
Sbjct: 661 SQIADYRVARVEDE-LTVGDEVVVKVREIDQK-GRVNLTRKGIDP 703