Pairwise Alignments

Query, 708 a.a., polyribonucleotide nucleotidyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 699 a.a., polynucleotide phosphorylase/polyadenylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  566 bits (1459), Expect = e-165
 Identities = 319/703 (45%), Positives = 443/703 (63%), Gaps = 19/703 (2%)

Query: 2   INPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQ 61
           +NPIVK+ E     T+TLETG +A+QADG+VM  MG+T +L TV   K+A PG DF PL 
Sbjct: 1   MNPIVKSFEYGQ-HTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLT 59

Query: 62  VEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSA 121
           V Y+EK  A G+ PGGF KREGR S+ E L  RL+DR +RPLFPD++  EV V I + S 
Sbjct: 60  VNYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSV 119

Query: 122 DGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVA 181
           D    PD ++ +  SAALA+S IPFNGP+   RV  ++G++V+NP   +L  +++DL+VA
Sbjct: 120 DPQIEPDIVSMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVA 179

Query: 182 ATYDNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKREYNHEVND 241
            T   ++MVE E   + E  +L A+   H+  +V   A  E   E GK  +  +   V +
Sbjct: 180 GTQSAVLMVESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKP-RWNWTAPVKN 238

Query: 242 EELRKAVREACYD---KAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAPLID 298
           E L   ++E   +    AY + A     K ER++A   +++   A+  E   +       
Sbjct: 239 EALVAQIKELAEEGLTAAYQIMA-----KQERYEAVGEVKKATIAKLQEANPDVNVREAA 293

Query: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358
                +EK  +R  I+    R+DGR+   IR +    G LP  HGSA+FTRGETQ+L + 
Sbjct: 294 DLLGSLEKNVVRGRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTC 353

Query: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418
           TLGT+ D + ID+++     RF+LHYNFPP+S GE        RREIGHG LAWR +   
Sbjct: 354 TLGTERDAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAV 413

Query: 419 IPA--DYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476
           +P+  ++PY VRVVSEI ESNGSSSMA+VC  +LALMDAGV IK  V+GIAMGL+K    
Sbjct: 414 MPSAEEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKE--G 471

Query: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536
           + + VLSDILGDEDHLGDMDFKV GTRDG+TA QMDIK++G++ EI+E AL QA   R+H
Sbjct: 472 DNFVVLSDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVH 531

Query: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596
           IL+ + + I   R D+ D APRI T+ I  E I  VIG GG +I+ + EETG  I +E+ 
Sbjct: 532 ILNVMDQAIGSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDD 591

Query: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656
              G ++++  N     +A+R I+ I +  EVG +Y GKV  I+ +GAF+  LPGKDGL+
Sbjct: 592 ---GTVKIASNNGDATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLV 648

Query: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRK 699
           HIS+I  +R+  V +  ++   E+ VK++++D + G+ +LS K
Sbjct: 649 HISQISDERVANVSD-HLQLNQEVTVKVMEVD-RQGRVRLSIK 689