Pairwise Alignments

Query, 445 a.a., putative outer membrane efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 525 a.a., multidrug transporter from Burkholderia phytofirmans PsJN

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 92/397 (23%), Positives = 176/397 (44%), Gaps = 39/397 (9%)

Query: 33  LRQCIDYAIEHNIDIRQTANEAEQNKISVNTAKWARLPNLNGGISQGWSWGRTASPKDNS 92
           +++ I+ A+++N D+R +    + +       +   LP L+   SQ     +  +PK+ S
Sbjct: 93  MQRLIEIALKNNRDLRVSVLNMQASAAQYRIVRAGLLPTLDAAASQ----SKQRTPKNLS 148

Query: 93  YSD---TNSSSTGVNLSTNVPLFTGLQLSNQYSLAKLNLQAAIEDLNKAKEDIAINVTSA 149
           ++    TN+ S G+N S  +  F  +Q     +LA+    A  +    A+  +   V + 
Sbjct: 149 FAGQTITNTYSVGLNASWEIDFFGRIQSLKDQALAQ--YLATAQARKAAEISLVSQVATQ 206

Query: 150 YLQVLFNLELNKVAQNQVELSKDQLKRIKGLHDVGKASPAE-------VAEAQARVAQDE 202
           Y+ VL   +L KV QN ++ S++  +  K   D G  S  +       V +AQA + Q  
Sbjct: 207 YMTVLELDDLLKVTQNTLKTSQESYRIAKLQFDNGTGSELDLRQSQTVVEQAQANLQQQM 266

Query: 203 MTAVQADNTYKLSLLSLSQLLELPTPEGFVLENPKEELKFEPLTAPDDIYIQAIAYKPGI 262
               QADN     +L + + L    P G  L+N +  L   P   P D+    +  +P I
Sbjct: 267 RLRAQADNAL---VLLIGEPLPDDLPPGMTLDN-QNLLTDIPAGLPSDL----LTRRPDI 318

Query: 263 KAAEYRLQGSLKNIRIAQSEFYPQLSFSAGLGSSYYTLNGEAESGFARQLKNNLSKSISF 322
             AE  L  +  NI  A++ F+P++S +   G+   +L G  + G A       + S + 
Sbjct: 319 MEAEENLLAANANIGAARAAFFPKVSLTGSFGTLSPSLGGLFKPGSA-------AWSFAP 371

Query: 323 NLSVPIFNRFSTRNRVRTARLQQSNLALQLDNAKKVLYKEIQQAWYNAVAAESKYTSSEV 382
           ++++PIF        +  A +Q+       + A +  ++++     +A+AA   Y     
Sbjct: 372 SITLPIFEGGQNLANLDLANIQKKVQIATYEKAIQSAFRDVA----DALAARGTYDQQIQ 427

Query: 383 AVKAN----EESFRLMSEKFNNGKATFVEYNEAKLNL 415
           A++ N    +    L + ++ NG  +++    A+ +L
Sbjct: 428 ALERNTFAEQRRLDLSNLRYTNGVDSYLTVLTAQTDL 464



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 29/165 (17%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 262 IKAAEYRLQGSLKNIRIAQSEFYPQLSFSAGLGSSYYTLNGEAESGFARQ-LKNNLSKSI 320
           ++ +   +Q S    RI ++   P L  +A         N      FA Q + N  S  +
Sbjct: 107 LRVSVLNMQASAAQYRIVRAGLLPTLDAAASQSKQRTPKN----LSFAGQTITNTYSVGL 162

Query: 321 SFNLSVPIFNRFSTRNRVRTARLQQSNLALQLDNAKKV-LYKEIQQAWYNAVAAESKYTS 379
           + +  +  F R  +   ++   L Q     Q   A ++ L  ++   +   +  +     
Sbjct: 163 NASWEIDFFGRIQS---LKDQALAQYLATAQARKAAEISLVSQVATQYMTVLELDDLLKV 219

Query: 380 SEVAVKANEESFRLMSEKFNNGKATFVEYNEAKLNLTKALSDKLQ 424
           ++  +K ++ES+R+   +F+NG  + ++  +++  + +A ++  Q
Sbjct: 220 TQNTLKTSQESYRIAKLQFDNGTGSELDLRQSQTVVEQAQANLQQ 264