Pairwise Alignments

Query, 366 a.a., major outer membrane protein OmpA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 21/183 (11%)

Query: 170 GRLGLGCNLRLNDRLAINIEGNANVLSDKFNSKKAGNADWQFNALVGLTIKFGKGYKEIP 229
           G  GL  N   N  + +  +   ++ +D   ++          A +G+  KFG       
Sbjct: 125 GAAGLEFNTNHNVTMRLEYQNLTDINNDIVRARAE-------TATLGIAYKFGGSE---- 173

Query: 230 PVYYEPEPVVVEQP-KPAPV---VEQPQPRKEVVVQPMKQDIFFALNSAKIQDDQKSKIN 285
               EP PVV ++P +PAPV   VE+    K    Q +    F A  SA+++     K++
Sbjct: 174 ----EPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTF-ATASAELKPATVQKLD 228

Query: 286 MLVEYLQKNPSAKVKVTGYADANTGNSKINKTLSEKRAANVAEVLKTKGITPDRIIADSK 345
            +V YL + P AKV+V G+ D+ TG+   N+ LSE+RA  VA+ L+ +GI   RI A   
Sbjct: 229 KIVGYLNQYPQAKVEVVGHTDS-TGSEAYNQKLSERRAQAVAKALEAQGIDASRISAKGL 287

Query: 346 GDT 348
           G++
Sbjct: 288 GES 290