Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 306 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  112 bits (279), Expect = 1e-29
 Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 3   ELLQKYIAGNASEKESQRIMEWLREDEQHLREYKRQRKLYDITLWQTKSPVDIQQEKKDP 62
           +LL++Y  G  S  E +++  WL +++     +    K+ D  + Q +    IQ   K P
Sbjct: 7   DLLERYAKGKCSPSEQKQVELWLADEQ-----FPEGSKIEDERI-QAEIYSAIQPHLK-P 59

Query: 63  LRRVLD----VIVRIAAVIVFTVATTYFYTHHVLQDKEENMQTVV-VPAGQHAELYLADG 117
           ++R ++    +   IAA I   +A+ +F+ +   Q K +    V   P GQ + + L D 
Sbjct: 60  IQRKINFKWLIYGSIAASIA--LASGFFFFN---QQKHQTQNIVFNAPFGQPSTITLPDS 114

Query: 118 THVWLNSGSRLTFPGRFSKKVRHVEL-DGEGYFKVSSNIKQPFIVGTNRCNIRVLGTEFN 176
           + V L  GS++++P +F K  R+V L  GE +F +  N  Q FI+ +    I+VLGT FN
Sbjct: 115 SKVELQPGSKISYPSKFDKTTRNVTLFSGEAFFIIRHNSAQAFILNSANSEIKVLGTRFN 174

Query: 177 VLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPGDMARLSKNQ---LTKEKIHTTDYF 233
           V   +   + E  L +G +    K   +S+  LKPG+    +K+    L+  ++ T+   
Sbjct: 175 VRNLKSAPVLEVTLTQGKISFQPKNGALSI--LKPGESLTFNKHNQHLLSITQVDTSGVT 232

Query: 234 RWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILDAHYTGKFRTHDGIEHVIRVLAL 293
            WK G I FND  + +++E L+  Y   F I+ Q  LD   +GKF    G + + RVL L
Sbjct: 233 AWKTGTIRFNDTPMPEVLETLENRYGFKFKISCQ--LDKPISGKF----GEQSISRVLQL 286