Pairwise Alignments

Query, 311 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 375 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  123 bits (309), Expect = 6e-33
 Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 99  MQTVVVPAGQHAELYLADGTHVWLNSGSRLTFPGRF-SKKVRHVELDGEGYFKVSSNIKQ 157
           MQT+    G+   + L DG+ VWLN+ S L +P  F S K R VEL GEGYF++  +   
Sbjct: 161 MQTLTTYRGETQAVVLPDGSKVWLNALSSLKYPASFASSKDRRVELTGEGYFEIEKDGAH 220

Query: 158 PFIVGTNRCNIRVLGTEFNVLAYEKDSIWETALLEGAVEILQKKSEVSLMKLKPGDMARL 217
           PFIV T++  + VLGT FN+ +Y  +   +T LLEG+V++  +    + + L+PG  + L
Sbjct: 221 PFIVSTDKQEVEVLGTHFNINSYTDEMATKTTLLEGSVKVSIRNGNGNKI-LEPGKQSTL 279

Query: 218 SKNQLTKEKIHTTDYFRWKEGLICFNDISLRDIMEKLKLYYDVNFVINNQQILDAHYTGK 277
             N+LT   +   D   WK+G   F++  L DI++++  +Y+V     ++ +    ++G 
Sbjct: 280 LNNKLTISDVDVDDEVAWKDGFFVFSNEPLSDILKQVSRWYNVEIEYQDESLKTKKFSGS 339

Query: 278 FRTHDGIEHVIRVLALNNKFTY-IKDNE 304
              +  +  V+R L       + IKD +
Sbjct: 340 VSRYAKVSQVLRKLEFTKSVVFKIKDQK 367



 Score = 37.4 bits (85), Expect = 6e-07
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 24/136 (17%)

Query: 3   ELLQKYIAGNASEKESQRIMEWLRE----------DEQHLREYKRQRKLYDITLWQTKSP 52
           +LL+KY  G A++KE + +  W+ E          +E H +   R R+     L      
Sbjct: 6   KLLEKYRNGQATDKEKELLERWVHELGGNEPVIYSEENHEQTIARGREALKPYL------ 59

Query: 53  VDIQQEKKDPLRRVLDVIVRIAAVIVFTVATT-YFYTHHVLQDKEENMQTVVVPAGQHAE 111
                 K D   R+   I  +AA I   VAT  YFY  H  + +++     + P    A 
Sbjct: 60  ------KGDKKTRLWPKIA-VAASIALAVATVGYFYQQHRNKTEQQFAANDIEPGRIAAT 112

Query: 112 LYLADGTHVWLNSGSR 127
           L L+ G  +++   S+
Sbjct: 113 LTLSSGKKIYIADASK 128