Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 625 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  118 bits (296), Expect = 6e-31
 Identities = 135/547 (24%), Positives = 213/547 (38%), Gaps = 83/547 (15%)

Query: 88  WVTSLWG--NQYKAISRANAVIEKSHRAIENGASATTINRLIAEAKFHRAAAYAKLIVKF 145
           WV   W     Y  I   N  IEK         S T  ++L  EA F RA  Y +L+  +
Sbjct: 100 WVDDTWAYKQMYNRIRACNITIEKITGGDNALTSQTLKDQLAGEAYFLRAYFYQQLLRFY 159

Query: 146 GDLPLVLTDVSTEEGLTMGRTDKSIVLAQIYKDFDDAISVLPTSYTDQQRATQGAALALK 205
           G +P++       +   + R      +  I KD D+A  +L     ++ R T  AALALK
Sbjct: 160 GAVPIITKTYVLNDNYNVKRNTYEECVNFIIKDCDEANKLLTGKTMEKGRTTATAALALK 219

Query: 206 ARVALIM---------------------------------EDWETAADAAKAVMD----- 227
           +RV +                                   + ++ A  AAKAVMD     
Sbjct: 220 SRVLIYAASDLHDRAKLTNKVSGIAAQKLDFLSYASGDQADRYKLAQTAAKAVMDATKGY 279

Query: 228 -------LNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLP 280
                  +++ E   ++ ++ +     +         +  +  Y    N  +     + P
Sbjct: 280 LLDLSAPVSVTEGSRNYKSIAMGGASKAPNIDAAAAAELIFARYFIVQNN-IKHAQQNGP 338

Query: 281 RNVGGWTQTCPSWELLAAFTCTDGLLINESPLFDPHEPFANRDPRLAETIVPFGS----- 335
                W    P   L+  +   DG   + +      EP+ NRDPR   T++  G+     
Sbjct: 339 NGYHNWAGNTPIGLLVDDYEMKDGSKFSWTNPAQKAEPYQNRDPRFYATVLYDGAGWKPR 398

Query: 336 NHLGYEYNPHPEALTCM-----NYNTGEIVTNYDTRANA---QYASFDGLVWKKGIDETW 387
           +      +P  +  T +     + N        DTRA++      S+ G  + K ID   
Sbjct: 399 DKASGNVDPASQIQTGVYDLLDDKNNKFDFKGLDTRASSIENWNGSWTGYYYHKFIDPDP 458

Query: 388 LQNGFKVDQDII--YCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKAS 445
                 + Q++   + RY E +  Y EA IEL E+ N+  + LN++R RA          
Sbjct: 459 TIVDASMSQNVPWPFFRYTEAVFNYIEASIELGELGNAT-NWLNKIRFRA---------G 508

Query: 446 YPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIE 505
            PA T+ DQ+ LR   R ERR+EMA E  RY D  RW +A + + RK   I         
Sbjct: 509 MPAVTATDQAGLREVYRHERRIEMAYEEQRYHDTRRWLIAGETLGRKVTYIKVTGKFKPG 568

Query: 506 RVTSQGDWFWAFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINEN 565
           +  S     + + P + +     +S + E     A   RSW+++ Y  P    E+  N  
Sbjct: 569 KTMSAP---YHYDPTVYD---YTYSPVVE----NAQENRSWDNKLYFRPFSRDEVNKNNL 618

Query: 566 LKQNPGY 572
           L+QNPGY
Sbjct: 619 LEQNPGY 625