Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 472 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  162 bits (409), Expect = 4e-44
 Identities = 164/582 (28%), Positives = 241/582 (41%), Gaps = 131/582 (22%)

Query: 12  ILLLSACHD--LNLNPLSSGSTENWYSTETEVQMAVDELY-RYDFWPE----------DG 58
           +L  S+C    LN+ P     +  ++ T+ +    V+ +Y +   W             G
Sbjct: 1   MLFTSSCKKDFLNVPPQGQQPSVTFWKTQDDALKGVNAIYAQLRSWDNVAFNAIAIESTG 60

Query: 59  QQQTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIENGA 118
             + D     T       FD  T+      +   W  QY+ I+  N V++        G 
Sbjct: 61  SDEADKGSTPTDATFFNLFDQFTVTSTQGSLQGFWTGQYQNINLCNQVLDNVPNI---GM 117

Query: 119 SATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSIVLAQIYKD 178
            A+   R++AEAKF RA +Y +L+  +G++PL LT         + ++DK++V AQI KD
Sbjct: 118 DASLKARILAEAKFIRAYSYFRLVRAYGNVPLRLTVPKDNSEYNIPQSDKAVVYAQIEKD 177

Query: 179 FDDAISVLPTSY--TDQQRATQGAALALKARVALIMEDWETAADAAKAVMDLNIYELHPD 236
             DA +VLP SY  TD  RAT+GAAL +KA+VA+  + W         VM L  Y+L PD
Sbjct: 178 LTDAAAVLPQSYASTDLGRATKGAALGMKAKVAMYQKKWADVLALTNQVMTLG-YDLFPD 236

Query: 237 FGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLPRNVG--GWTQTCPSWE 294
           F   F    +NS E IF++  +      L + +   N  Y+ +    G  GW    PS E
Sbjct: 237 FEKGFRVANENSVESIFEVQAE-----LLPSNSAASNSQYSQVQGVAGVMGWGFNTPSAE 291

Query: 295 LLAAFTCTDGLLINESPLFDPHEPFANRDPRLAETIVPFGSNHLGYEYNPHPEALTCMNY 354
           L AA                    F   DPR   TI+  G      E  P          
Sbjct: 292 LEAA--------------------FETGDPRKDATILFRG------ETTPQ--------- 316

Query: 355 NTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFK--VDQDIIYCRYAEILLTYAE 412
             G++V    T  NA+Y        K  +      +GF     Q+I   R+++ILL  AE
Sbjct: 317 --GDLVPT--TVPNARYNQ------KSYVPFNTRVSGFNEGAQQNIRVLRFSDILLMNAE 366

Query: 413 AKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKE 472
           A  EL   +   L +LN VR RA G   +     P  T+ DQ+ LR+ +  ER++E+A E
Sbjct: 367 AANELGN-NAQALTSLNRVRKRARG---ASVTILPDVTTTDQTALRNAIWKERQVELAME 422

Query: 473 HMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFSKL 532
           + RY D+IR                            QG     F P             
Sbjct: 423 NDRYFDVIR----------------------------QGRALAIFGP------------- 441

Query: 533 EEAGKCQALAVRSWN-DRQYLWPIPTTELQINEN-LKQNPGY 572
                      + W  ++  +WP+P TE+ ++   LKQNPGY
Sbjct: 442 -----------KGWKANKNEVWPVPQTEIDLSGGLLKQNPGY 472