Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 554 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  170 bits (430), Expect = 2e-46
 Identities = 183/626 (29%), Positives = 269/626 (42%), Gaps = 130/626 (20%)

Query: 1   MKKLLLYIGAGILLLS---ACHD--LNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWP 55
           MKK+  YI   +LLLS   +C    L   PL+  S   ++    +V +AV+ +Y     P
Sbjct: 5   MKKI--YIITSVLLLSVIVSCKKDFLERPPLNQVSEATFWKNANDVYLAVNGVYSQ--LP 60

Query: 56  EDGQQQTDWSDD-----YTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKS 110
            D     D + D     Y      TS   G +N      T   G  + AI RAN  ++ +
Sbjct: 61  GDDMVYDDAAADNAHAQYPWESSATSVSSGNVNS-----TLNAGWDFTAIGRANYFLDNA 115

Query: 111 HRAIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSI 170
            +          ++R  AE +F RA AY  LI KFGD+PL    V       + RT K+ 
Sbjct: 116 DKV--TSMDKALLDRYKAEVRFIRANAYFWLICKFGDVPLSTKTVELGRE-NLPRTPKAE 172

Query: 171 VLAQIYKDFDDAISVLPTSYT-----DQQRATQGAALALKARVALIMEDWETAADAAKAV 225
           VL  +  + D    VLP SY      ++ R T+GAALALKAR  L    W+ AADAA  V
Sbjct: 173 VLKFVVDELDAIAKVLPQSYAGGKPNEKGRITKGAALALKARAHLYEGQWQLAADAASQV 232

Query: 226 MDLNIYELHP----------DFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQV 275
           M L  Y+L+           D  ++++      +E  F++    +Y+      N G  +V
Sbjct: 233 MTLG-YDLYKVTAEDALNAKDDYSVWVDFANADDEKKFRLGL-RSYEALFHQVNEGNVEV 290

Query: 276 YNDLPR----------------NVGGWTQTCPSWELLAAFTC--TDGLLINESPL----- 312
             D  R                ++GGW    P+ EL+ ++    T  L+   S       
Sbjct: 291 ILDRQRIPQQDANFLNTLLPSGDLGGWGSIAPTQELVNSYPSYKTGDLITPPSQAQRAAW 350

Query: 313 FDPHEP-----FANRDPRLAETIVPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRA 367
           +   +P     + NRDPR   +I+        ++ NP         +N  E   ++    
Sbjct: 351 YKAKDPAFKNEYKNRDPRFYASIL--------FDGNP---------WNAIEDDYSFKWTE 393

Query: 368 NAQYASFDGLVWKKGIDETWLQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNSVLDA 427
            A   +  G   +K +D    ++      + I  RYAE+LLTYAEAK EL   D +V DA
Sbjct: 394 GAGNTALTGYSVRKMVDPKIYRDQIDNHANNILIRYAEVLLTYAEAKNELTGPDATVYDA 453

Query: 428 LNEVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEK 487
           L+++R RA G+   D+  Y       Q TLR  +R ERR+E+A E  RY DI RWK+A +
Sbjct: 454 LDKIRTRA-GMPVVDRTKYAT-----QETLRALIRNERRIELAIEGQRYMDIRRWKIAPQ 507

Query: 488 VMNRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFSKLEEAGKCQALAVRSWN 547
           VM +  Y I                                      A   + +  R+WN
Sbjct: 508 VM-KPIYSI--------------------------------------ADAAKPIQERTWN 528

Query: 548 DRQYLWPIPTTELQINEN-LKQNPGY 572
           D+ YL PIP  ++ +++  LKQN GY
Sbjct: 529 DKLYLMPIPQDQIDLSKGVLKQNSGY 554