Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 544 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  127 bits (320), Expect = 9e-34
 Identities = 141/533 (26%), Positives = 221/533 (41%), Gaps = 89/533 (16%)

Query: 65  SDDYTSRDLLTSFDDGTLNGQ--------NAWVTSLWGNQYKAISRANAVIEKSHRAIEN 116
           +DD  S D+  +  D    GQ        N WVTS     Y AI R N ++     +   
Sbjct: 75  TDDALSGDISVTAVDKFKTGQWGPSDLPENPWVTS-----YMAIRRVNILLANIGTS--- 126

Query: 117 GASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVST-EEGLTMGRTDKSIVLAQI 175
           G      + L  +A+  R   Y +L+ ++G +PL+   V    + L + R  ++  +  I
Sbjct: 127 GIPDVKKDALRFQARALRIIFYFELVKRWGGVPLIGDKVFVLNDNLQLPRNTRAECVDYI 186

Query: 176 YKDFDDAISVLPTSYTDQQ--RATQGAALALKARVALI-----------MEDWETAADAA 222
             + +     LP + T  +  R ++G  LALK+R+ L            +  W+ AA AA
Sbjct: 187 LAECEFLKDKLPATLTAGEVGRLSKGVVLALKSRLLLYEASPLYNPSNDVVKWQAAAKAA 246

Query: 223 KAVMDLNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLPRN 282
             ++ LN Y L  +FG +F  TT+++ EFI           Y    N  +  +       
Sbjct: 247 DDLIKLNSYSLEANFGTMF--TTRSNKEFILA---------YQQADNTSIESLNEPPGYK 295

Query: 283 VGGWTQTCPSWELLAAFTCTDGLLINESPL-FDPHEPFANRDPRLAETIVPFGSNHLGYE 341
             G   T P+  L+ AF   +G  I E+   ++  +P+ +RDPR   TI      H G+ 
Sbjct: 296 RAGQGITDPTQNLVDAFPMLNGKAIGEAGSGYNAADPYKDRDPRFYLTIF-----HNGFS 350

Query: 342 YNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFK-VDQDIIY 400
           +   P        N   I     T+         G   +K +  +    GF     +   
Sbjct: 351 WLGSPVETFVGGKNNTRIGIGMGTKT--------GYYMRKFMITSGSATGFSSATHNFPI 402

Query: 401 CRYAEILLTYAEAKIE-LNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSNDQSTLRH 459
            RYAEILL YAEA+ E L   D SV   +N++R R        + S       D++ +R 
Sbjct: 403 FRYAEILLNYAEAQNEVLAAPDASVYKVINDLRKRGGSTGVFAQGSL------DKAQMRA 456

Query: 460 QLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWAFTP 519
            +R ERR+E+A E  R+ DI RWK+AE V+N    G+         ++    D  + + P
Sbjct: 457 IIRNERRIELAFEEHRFWDIRRWKIAENVLNGSLKGM---------KIIQNADKTFTYDP 507

Query: 520 EMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572
            +                     V     + YL+P+P  E+Q N  L QNPG+
Sbjct: 508 NV-----------------VVQTVTFDAAKMYLYPVPYLEIQKNSALVQNPGW 543