Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 548 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  131 bits (330), Expect = 6e-35
 Identities = 157/609 (25%), Positives = 259/609 (42%), Gaps = 110/609 (18%)

Query: 4   LLLYIGAGILLLSACHDLNLN--PLSSGSTENWYSTETEVQMAVDELYRYDFWPEDGQQQ 61
           LL+  G  +L + AC D  L+  P    +  N ++ +    + ++++Y+      DG   
Sbjct: 10  LLIATGCVLLTVQACKDSELDVIPRDRLTEANVWTDQGASNLFLNDIYQ---GLPDGNNW 66

Query: 62  TD----WSDDYT-------SRDLLTSF--DDGTLNGQNAWVTSLWGNQYKAISRANAVIE 108
            D    WSD+         SR ++     +  ++ G +      W   Y  I + N  I+
Sbjct: 67  YDPVENWSDNSICGFPWPGSRQVVQQMIVNPNSIPGGDIGNIYGWTRNYSYIRKCNLFIK 126

Query: 109 K-SHRAIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEG--LTMGR 165
             S  ++      +++    AE K  RA  Y  L + +G +P++   +S ++G  +   R
Sbjct: 127 NVSASSLPEAFKKSSL----AEVKVLRAYYYQLLWMAYGGVPIITDVLSQDQGDAIFKPR 182

Query: 166 TDKSIVLAQIYKDFDDAISVLPTSYTDQQRATQGAALALKARVALIMEDWETAADAAKAV 225
                 +  I K+  DA + LP +     R  +  A+ LK  V L    W  AA + K +
Sbjct: 183 NTADETMQFITKECADAYADLPDA-PGSGRIGKATAMVLKGWVELFANKWSDAAASNKKI 241

Query: 226 MD-LNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQ-------VYN 277
           +D L  Y+L PD+   FL     S E IF       Y  Y+ T  GGV           N
Sbjct: 242 IDDLKNYDLDPDYEAFFLKKGNASKESIF-------YREYIATVKGGVIDGTCGPTFTGN 294

Query: 278 DLPRNVGGWTQTCPSWELLAAFTCTDGLLINE-SPLFDPHEPFANRDPRLAETIVPFGSN 336
           D   + GG     P+ EL+  +   +G +I + S  +DP +P+  R+ R  ++I   G  
Sbjct: 295 DAETSWGGVN---PTQELVDDYAMANGKVITDPSSGYDPQKPYVGREKRFYQSINFDG-- 349

Query: 337 HLGYEYNPHPEALTCMNYNTGEIVTNYDTRANA------QYASFDGLVWKKGIDETWLQN 390
                         C  YNT   ++  D  ANA        A+  G   +K +++     
Sbjct: 350 --------------CYWYNTS--LSMRDNAANAIDLADKNDATQTGYYMRKRLNDKITLG 393

Query: 391 GFK-----VDQDIIYCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKAS 445
                    DQ+    RYAE+LL YAEA+ E    D SV +A+  +R RA      +  +
Sbjct: 394 AANWDVGTSDQNYNIFRYAEVLLNYAEAQNEAVGPDASVYNAIGRIRTRA-----GNLPN 448

Query: 446 YPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIE 505
            PA  S  Q+ +R  +R ERR+E+A E  RY D+IRW++AE  +N+  +G+         
Sbjct: 449 LPAGLS--QAEMRTAIRRERRIELALEDKRYWDLIRWRIAEVNLNKPLHGM--------- 497

Query: 506 RVTSQG-DWFWAFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINE 564
           ++T+ G +  +   P +  D                   + +  + YL+PIP   +  N+
Sbjct: 498 KITTNGSNVTYTVVPAVGGDR------------------KFFASKNYLFPIPQNVIDQNK 539

Query: 565 NLK-QNPGY 572
            +K  NPGY
Sbjct: 540 QIKGNNPGY 548