Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 551 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  177 bits (449), Expect = 1e-48
 Identities = 165/604 (27%), Positives = 267/604 (44%), Gaps = 90/604 (14%)

Query: 1   MKKLLLYIGAGILL---LSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYR------- 50
           MKK +  +   ILL   +S    L+  PL S + E +++T   V +A+  +YR       
Sbjct: 1   MKKYIYSLSIVILLTGSISCRKQLDTTPLDSFANETFWTTPQNVLIALTGVYRGNIQMLT 60

Query: 51  ----------YDFWPEDGQQQTDWSDD--YTSRDLLTSFD---DGTLNGQNAWVTSLWGN 95
                      D+W  +G   T+++ D  Y  R   ++++   +G L   NA ++ +W  
Sbjct: 61  IPATDVEFNPTDWWSYNGLLFTEFATDNVYDRRGDNSAYNTLTNGALTNSNANLSQVWNF 120

Query: 96  QYKAISRANAVIEKSHRAIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDV 155
            Y  I+R N  +E   +A      A  + R +AE +F RA  Y  L   FG +PLV   +
Sbjct: 121 SYGKIARCNYFLENISKA--TSLDAKLLKRYMAEVRFIRACQYFYLSQHFGSVPLVTKVL 178

Query: 156 STEEGLTMGRTDKSIVLAQIYKDFDDAISVLPT----SYTDQQRATQGAALALKARVALI 211
           + EE  T+ +     V   +  +    I  LP       +++ RA+   A+A   R+ + 
Sbjct: 179 TKEEANTVKKASVLEVQNYVESELKTVIPDLPKYGAIPASEKGRASAQVAMAFLGRLYMA 238

Query: 212 MEDWETAADAAKAVMDLNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGG 271
            + W   A   K ++D N   + P F +LF  T ++S E IF       Y   LG  +  
Sbjct: 239 EQKWADGAAVYKQIIDYNENIIDPKFSSLFDGTNESSKEIIFA----TQYQQDLGPNS-- 292

Query: 272 VNQVYNDLPRNVGGWTQTCPSWELLAAFTCTDGLLIN-ESPLFDPHEPFANRDPRLAETI 330
              + +  P  +GG+  + P   L  ++   DG   +   P ++P +   NRDPRL  T+
Sbjct: 293 --MLLHMYPAALGGYHLSNPLGNLAESYEFNDGTPFSFTDPRYNPADLGQNRDPRLKYTL 350

Query: 331 VPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQN 390
           +  G       Y+ HP+             ++ D    ++ A+  G   +K + ET+  +
Sbjct: 351 LYNGQLFKNIIYDCHPDH-----------TSSPDQLTTSKQATRTGFAPRKFLAETFGGS 399

Query: 391 GFK---VDQDIIYCRYAEILLTYAEAKIELNE-IDNSVLDA-LNEVRARAYGVDKSDKAS 445
                 +D  II  RYAE+LL+Y E ++E    ID ++LDA +N+VR RA         S
Sbjct: 400 NLANSGIDLPII--RYAEVLLSYLECQLEAGSAIDQTLLDATINKVRGRA-------DVS 450

Query: 446 YPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIE 505
            P  T  + + LR  LR ERR E+A E +R  D++RWK+A  V+    YG  YP +  + 
Sbjct: 451 MPKVTETNPANLRTILRRERRNELALEGIRLWDLLRWKIAGTVLKGNFYGAAYPGATNLR 510

Query: 506 RVTSQGDWF--WAFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQIN 563
           +  +  D +  W  T +    G                       +  LWPIP +E+ IN
Sbjct: 511 KNGTTVDPYSRWFVTSKNFRTG-----------------------QDELWPIPLSEVSIN 547

Query: 564 ENLK 567
            NLK
Sbjct: 548 PNLK 551