Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 500 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  206 bits (523), Expect = 2e-57
 Identities = 177/582 (30%), Positives = 265/582 (45%), Gaps = 94/582 (16%)

Query: 1   MKKLLLYIGAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYR---YDFWPED 57
           MKK +L+I   + L      L++ P    + + +++T+ + + A++  Y    Y+ +  +
Sbjct: 1   MKKYILFILISVFLFGCKDYLDVTPTDRFTQDTYWNTKVQAEAALNGTYAAIYYNVYAAN 60

Query: 58  GQQQTDWSDD-YTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIEN 116
                  S + Y   +       G  N    +    W   YK I RAN V+    +   +
Sbjct: 61  SIYLDALSPNTYQYNNDYNIISRGLHNAATGYFNETWNGSYKGIGRANNVLANIDKVNMD 120

Query: 117 GASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSIVLAQIY 176
           GA      R  AEAK+ RA  Y  L   FG  PL+    + E    + R     +LAQI 
Sbjct: 121 GALK---ERYKAEAKYLRALYYIPLWNLFGGAPLITDATNYETQANLPRNTADELLAQIL 177

Query: 177 KDFDDAIS--VLPTSYT--DQQRATQGAALALKARVALIMEDWETAADAAKAVMDLNIYE 232
           KD  +A S  VLP +Y+  D+ RAT+GAALALKARV L  + W+ AA+AAKAV+DL  Y 
Sbjct: 178 KDLTEASSGTVLPLTYSGVDKGRATRGAALALKARVLLYAKRWKEAAEAAKAVIDLKTYS 237

Query: 233 LHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLPRNVGGWTQTCPS 292
           L PD+  LF    + + E IF    D  Y     T +  ++     L + +G    + P 
Sbjct: 238 LFPDYRGLFYLENEGNAEVIF----DVQYKYPEFTHSLDIS-----LDQQLG----SAPL 284

Query: 293 WELLAAFTCTDGLLINESPLFDPHEPFANRDPRLAETIVPFGSNHLGYEYNPHPEALTCM 352
            +L+  +  TDG  IN S +++  +PF NRD RL  T++  G+   G         +T +
Sbjct: 285 PDLVNTYYATDGKPINSSAVYNAAKPFENRDSRLQATVILPGTQFKG-------ATVTAI 337

Query: 353 NY-NTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQDIIYCRYAEILLTYA 411
            Y +TG  +  Y              ++K              + ++I  RYA++LL YA
Sbjct: 338 QYPSTGYGLKKY-------------TIFKDNEKPVAAPTSGTSELNLILLRYADVLLMYA 384

Query: 412 EAKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSN-DQSTLRHQLRVERRMEMA 470
           EAK E +  D SV DALN +RAR         A  P   S   Q  LR ++R ERR+E+A
Sbjct: 385 EAKNEDSGPDQSVFDALNLIRAR---------AKMPNIPSTLGQEELRAEIRHERRVELA 435

Query: 471 KEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFS 530
            E + Y DI RW++A++++N                +T+               G    S
Sbjct: 436 GEGLYYYDIRRWRIADQLLN--------------GNITNSA-------------GARIDS 468

Query: 531 KLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572
           +L +A K             YLWP+P+  +Q N  LKQNP Y
Sbjct: 469 RLFDANK------------DYLWPVPSIAIQNNPALKQNPNY 498