Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 609 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  119 bits (298), Expect = 3e-31
 Identities = 166/639 (25%), Positives = 249/639 (38%), Gaps = 111/639 (17%)

Query: 1   MKKLLLYIGAGI---LLLSACHD-LNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPE 56
           MKKL++ I       +L S C   L    L +   E  Y+      ++++ +Y       
Sbjct: 1   MKKLIILIAISASLTMLFSNCKKVLEKQDLGNFVAEQIYNDSVTATLSMNYIY------- 53

Query: 57  DGQQQTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQY--KAISRANAVIEKSH--- 111
            GQ Q  W               G + G +  V SL   QY      +  A IE      
Sbjct: 54  -GQNQPSWF--------------GNVGGLSGSVNSLSDEQYGDNVFVKGTATIESVTDLG 98

Query: 112 ------------------RAIENGA-SATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVL 152
                             R I NG  SA T  R  A+A F RA  Y +L+  +G +P+VL
Sbjct: 99  NLNTAGNYVKIRSINMFIRDINNGTLSAGTKRRFNAQATFWRAFRYFELVKLYGGVPIVL 158

Query: 153 TDVST-----EEGLTMGRTDKSIVLAQIYKDFDDAISVLPTSYT---DQQRATQGAALAL 204
           T +       ++   + R   S   AQI +D D  I  LPT +T   D  R T+GAALA 
Sbjct: 159 TPLDAVGDEAKKAALLPRNTTSETFAQIIRDLDTCIKYLPTKWTSNADYGRITKGAALAY 218

Query: 205 KARVALIMED-----------WETAADA---AKAVMDLNIYELHPDF--------GNLFL 242
           K +V +               W+ A DA   A   +  N + L+  F        G+   
Sbjct: 219 KGKVLMYWASPEFNPTNDQTRWKAAYDANVLAVENLSTNGFGLYSKFDVTMWTTEGSKSG 278

Query: 243 STTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLPRNVGGWTQTCPSWELLAAFTCT 302
           ST +N    +      AT D+     N   N          GG     P++++  AF   
Sbjct: 279 STPQNPEAVLTTQYNMATTDL-AQNNNTYPNATVPKYIGTTGG--SNLPTYDMALAFPMK 335

Query: 303 DGLLINESPLFDPHEP---FANRDPRLAETIVPFGSNHLGYEYNPHPE-ALTCMNYNTGE 358
           DG     S  + P+     + +RDPR  +TI   G+N   +  N +P   L   NY  G 
Sbjct: 336 DGKDAGTSTKY-PYTLATFYKDRDPRFDQTIAYNGAN---WPLNANPNYRLWTYNYTKGS 391

Query: 359 IVTNYDTRANAQYASFDGLVWKKGIDETWLQNGF-KVDQDIIYCRYAEILLTYAEAKIEL 417
              + +++A A      G   +KGID     + F     D I  RYAE+LL  AE   E+
Sbjct: 392 TTLSTESQATAS-----GFYLRKGIDPALTTSNFIYAGTDWIEMRYAEVLLNLAECAAEI 446

Query: 418 NEIDNSVLDALN--EVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMR 475
             +  S     N   +R RA G++      Y        + L   +  ERR+E+A E  R
Sbjct: 447 GNVGQSQEAYANLIAIRKRA-GIEAGTDGLYGLTAGMSGAQLVTAIMRERRIELAFEGKR 505

Query: 476 YTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFW-----AFTPEMDEDGCADFS 530
           + D+ R KL E  +N K        ++ ++   +  D+       A    +D     +F+
Sbjct: 506 FWDLRRRKLLETTLNGKR---RLAINIALKNTGTGTDYILSTRDAAAATNLDAFYATNFT 562

Query: 531 KLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQN 569
              +A     +A ++     Y + IPT  +Q N NL+QN
Sbjct: 563 VTTKALDTYDIAYQA---GVYFFGIPTASIQNNVNLQQN 598