Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 590 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  139 bits (349), Expect = 4e-37
 Identities = 173/647 (26%), Positives = 254/647 (39%), Gaps = 132/647 (20%)

Query: 1   MKKLLLYIGAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPEDGQQ 60
           MKK + Y+    + L+       + L  GS        TE Q+  +  Y  +F       
Sbjct: 1   MKKNIFYLILAFVALALAGCKKSDFLQDGSFSGGNDI-TEAQLWANPDYARNFL---NNV 56

Query: 61  QTDWSDDYTSRD--LLTSFDDGTLNG-QNAWVTSL--------------WGNQYKAISRA 103
               SD Y   D  LL S  D  +N  QN+ +++L              + + Y  I +A
Sbjct: 57  YAVLSDRYNLGDGALLASGSDEAVNSNQNSSISTLNNGTWSPVRTFDDVYADMYVGIRKA 116

Query: 104 NAVIEKSH-------------RAIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPL 150
           N  +EK                  EN   A  I RL  +A F RA    +L+ ++G  P+
Sbjct: 117 NMFLEKVDGSAIVPIDEVLPANVAENQTYAAQIERLKGQAYFLRAFFQFELLKRYGSFPI 176

Query: 151 VLTDVSTEEGLTMGRTDKSIVLAQIYKDFDDAISVLPTSYTD-----QQRATQGAALALK 205
           V   ++  + L + R      +AQI  D D AI+ LP S  D     + RA Q +A+ALK
Sbjct: 177 VTKTLTINDNLDLPRNTFDQCVAQISADCDAAIARLPISPADWNNVNRGRAAQTSAMALK 236

Query: 206 ARVALIMED-----------WETAADAAKAVMDLNIYELHPDFGNLFLSTTKN---SNEF 251
           AR+ L               W+ AADAAK ++D   + +   + N++L    N   +NE 
Sbjct: 237 ARMLLYAASPQYNPTGDAAKWQAAADAAKRLIDTGKHGIFAAYQNIWLWNATNAAYNNEV 296

Query: 252 IFKIPRDATYDIYLGTGNGGVNQVYNDLPRNVGGWTQTCPSWELLAAFTC-TDGLLINES 310
           IF     AT  +   T       V  D     G   +T P+ E++ AF   T G  I ++
Sbjct: 297 IF-----ATQTLNTNTIESSNAPVSYD-----GATGRTNPTQEMVDAFEMKTTGKAITDA 346

Query: 311 PL-FDPHEPFANRDPRLAETI---------VPFGSNHLGYEYNPHPEALTCMNYNTGEIV 360
              +    P+ANRDPRLA  I         V   +N  G            +N N     
Sbjct: 347 NSGYVATNPYANRDPRLAFAIMFNTASVQPVVTANNFKGKPVETFVGGKDGLNLNVNATK 406

Query: 361 TNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQDIIYCRYAEILLTYAEAKIELNEI 420
           T Y  R   +Y S + +         W      V +  I+ RYAE+LL YAEA   LNE 
Sbjct: 407 TGYYMR---KYLSENAV---------WTGTATNVRRPWIFFRYAEVLLNYAEA---LNEA 451

Query: 421 D-----NSVLDALNEVRARAYGVDKSDKASYPAFTSNDQST----------LRHQLRVER 465
                   +L ++N VR R      +     PA  + + S           LR ++  ER
Sbjct: 452 QGPAALTEILKSVNAVRQRKNTATPAQSVDMPALQTTNPSAAGYVAPTKEELRKRIHNER 511

Query: 466 RMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDG 525
           R+E+  E  R+ D+ RWK  E   N+   G+         R+       +++TP   E+ 
Sbjct: 512 RVELCFEEQRFYDVRRWKEGEITFNKPVTGM---------RIVQLTPTTFSYTPFTVEN- 561

Query: 526 CADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572
                             R +  + YL+PI   EL     L QNPGY
Sbjct: 562 ------------------RVFTAKNYLYPIAQNELNKAPGLGQNPGY 590