Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 587 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  113 bits (283), Expect = 2e-29
 Identities = 127/461 (27%), Positives = 195/461 (42%), Gaps = 66/461 (14%)

Query: 65  SDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIENGASATTIN 124
           S + T  +  T+    TLN  + +    WGN Y  I  AN  +   +       +A T  
Sbjct: 104 SRNNTQVEYFTNGRISTLNNPDPY----WGNSYYGIRAANIFLANINVV---PIAALTKQ 156

Query: 125 RLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVST-EEGLTMGRTDKSIVLAQIYKDFD--- 180
              AEA++ RA  Y +L+ ++G +PL+   V T E+ L + R   +  +  I  + D   
Sbjct: 157 YWRAEARYIRALLYFELLKRYGGVPLIGNKVFTLEDNLELPRNSFADCINYIISECDAVK 216

Query: 181 DAISV-LPTSYT--DQQRATQGAALALKARVALIMED----------------------- 214
           D++ +    +YT  D  R  +GAA+ALK R  L                           
Sbjct: 217 DSLRLETGANYTTSDWGRIPKGAAIALKCRAYLYAASPLYNGGGVESNGTLKVLTGYPTA 276

Query: 215 ----WETAADAAKAVMDLNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNG 270
               W+   DAA  +  LN Y+L P F N+FL T KN+   + K    A  +  + T N 
Sbjct: 277 DASRWQKVIDAAVELNALNYYQLQPVFNNVFL-TNKNTEVILSK---QAAVNTGIETTNA 332

Query: 271 GVNQVYNDLPRNVGGWTQTCPSWELLAAFTCTDGLLINESPL-FDPHEPFANRDPRLAET 329
                   L        +T P+ +L+ AFT  +GL I ++   ++P  P+ NRD RL  T
Sbjct: 333 PSGYGAPALSNG-----RTSPTADLVNAFTMRNGLPITDAASGYNPAAPYTNRDLRLDYT 387

Query: 330 IVPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQ 389
           I   G N L      +   L      T +  T Y  R           +     + T+  
Sbjct: 388 IFYNGVNWLNRGVQTYEGGLDKPGGTTVQTRTGYYLRK---------FMGNFATNSTYTN 438

Query: 390 NGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAF 449
                  + I  RYAEI+L YAEA  E+   +++V   +  +R RA G+       Y   
Sbjct: 439 Q----SHNFIIFRYAEIILNYAEALNEVGRTEDAVKQII-LLRTRA-GITAGANTRYGIP 492

Query: 450 TSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMN 490
               Q ++R  +  ERR+E+A E  R+ DI RWK+A  V++
Sbjct: 493 VGISQESMRTLIMNERRVELAFEEHRFWDIRRWKIAPAVLS 533