Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 566 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  144 bits (364), Expect = 7e-39
 Identities = 162/553 (29%), Positives = 235/553 (42%), Gaps = 92/553 (16%)

Query: 49  YRYDFWPEDGQQQTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSL-WGNQYKAISRANAVI 107
           + Y  W     +    +DD+T          G L  +N     + WG  YK+I   N  +
Sbjct: 77  FEYSMWSSYTDESVYNNDDFT-----WLIQRGQLAPENLGSAGVYWGRSYKSIRECNYAL 131

Query: 108 EKSHRAIENGA-SATTINRLIAEAKFHRAAAYAKLIVKFGDLPLV------LTDVSTEEG 160
                 + N A S +   +LIAE KF RA  Y  LI  +G + L+      LTD   +  
Sbjct: 132 S----VLANIAMSPSHKKQLIAELKFVRAFRYQDLIRNYGGVVLMGDKVTSLTDNLQDPA 187

Query: 161 LTMGRTDKSIVLAQIYKDFDDAISVLPTSYTDQQ---RATQGAALALKARVALIMED--- 214
           L    T K  +   + +  D A + LP   ++     RAT+GAALALK+R+ L       
Sbjct: 188 LFQRATIKQSIDYAVAQ-LDQAAADLPLDNSNSWMAGRATKGAALALKSRLLLYAASPLY 246

Query: 215 ----WETAADAAKAVMDLNIYELHPD-FGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGN 269
               WE AA AA+AV+ LN Y ++   + NLFL+   N   F     ++A +  +L   N
Sbjct: 247 NAGTWEAAAAAAQAVIGLNKYSIYTGGYENLFLNDQNNEIIFARLFTKNANHT-HLEIAN 305

Query: 270 GGVNQVYNDLPRNVGGWTQTCPSWELLAAFTCTDGLLINESPL-FDPHEPFANRDPRLAE 328
           G         P   GGW    P   L+  +   +G  I +    +D + P+  RDPR A 
Sbjct: 306 G---------PNGYGGWGGNLPMQNLVDDYQMANGKPITDPTSGYDVNNPYQGRDPRFAA 356

Query: 329 TIVPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYAS-FDGLVWKKGIDETW 387
           TI+  G+ +       + E       ++ + + N++T     Y   F    +   +   W
Sbjct: 357 TILYNGAAYR----ERNVETFIPGGKDSKDGIDNWNTTKTGYYLKKFMNNAYP--LQNPW 410

Query: 388 LQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDN-------SVLDALNEVRARAYGVDK 440
              GF   Q  IY RYAEILL YAEA  E    +        S   A+N VRAR  GV+ 
Sbjct: 411 GNAGF---QPWIYFRYAEILLNYAEAANEAYGPEAVPAGATMSARQAINMVRARP-GVNM 466

Query: 441 SDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPA 500
              A         QS +R  +R ERR+E+A E  R+ D+ RWK+A+   N+   GI+   
Sbjct: 467 PALA-----VGITQSQMRDAVRYERRVELAFEEHRFYDVRRWKIADITENKPAGGII--- 518

Query: 501 SLCIERVTSQGDWFWAFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTE- 559
                 +T  G  F  +T ++  DG                  R +  + Y  PIP  E 
Sbjct: 519 ------ITKVGTGF-TYTSKIALDG------------------RKFETKHYWLPIPRAEI 553

Query: 560 LQINENLKQNPGY 572
           L     L+QNPGY
Sbjct: 554 LASGGKLQQNPGY 566