Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 506 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  130 bits (328), Expect = 1e-34
 Identities = 164/596 (27%), Positives = 243/596 (40%), Gaps = 114/596 (19%)

Query: 1   MKKLLLYIGAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPEDGQQ 60
           MK   L +   +  LSAC  L+ NP S  S E +Y T  +   AV+ +Y        G Q
Sbjct: 1   MKIKYLLLAIAVASLSACVKLDENPKSFISPEQFYKTAGDAVSAVNAIYYPMVDNSTGAQ 60

Query: 61  QTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSL---------------WGNQYKAISRANA 105
                  YT  D LT   D      NA V +L               W   Y+ I++AN 
Sbjct: 61  PIYNRLFYTGLDFLTDDLDAGPGSPNAEVRALAKLTHASTNLRIQQIWTEHYEGINKANI 120

Query: 106 VIEKSHRAIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVL---TDVSTEEGLT 162
            +E+   AIE        NRL+ EAKF RA  Y  L+  +GD+PL+L   T +S  E L 
Sbjct: 121 ALERIP-AIEMDGKLK--NRLLGEAKFLRAFYYFNLVRLYGDVPLLLKDQTQLSIAE-LQ 176

Query: 163 MGRTDKSIVLAQIYKDFDDAISVLPT-SYTDQQRATQGAALALKARVALIMEDWETAADA 221
           + RT K  V  QI  D + A S+    S  +  RAT+GAA+AL ++V L   DW  A   
Sbjct: 177 VPRTPKEQVYLQIINDLETAASLFKAGSGGEAGRATEGAAVALLSKVYLTRRDWANAVKY 236

Query: 222 AKAVMDLNI-YELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLP 280
           A+AV+  +  Y L  D+  +FL   KN  E IF      +  I   T + G     +D+ 
Sbjct: 237 AEAVITGSYGYALFDDYAQVFLPAYKNGKEHIF------SAQIKGSTISTGHLITSSDIR 290

Query: 281 RNVGGWTQTCPSWELLAAFTCTDGLLINESPLFDPHEPFANRDPRLAETIVPFGSNHL-G 339
             V G   +  +   LA +T      +     F  ++ ++ +D R   + V + ++   G
Sbjct: 291 SGVPGLKGSYGN--QLAFYT------VGSDNFFSLYKLYSGKDKRKRVSFVTYYTSPTDG 342

Query: 340 YEY---NPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQ 396
            +Y   N   +++  +N N      NY +  N+                         D 
Sbjct: 343 KKYATINAPGDSVPFINKNWD---PNYASTGNS-------------------------DA 374

Query: 397 DIIYCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSNDQST 456
           ++   R+AE++L  AEA+ ELN   +    ++N++R RA   D +        T   +  
Sbjct: 375 NMNILRFAEVILIDAEAENELNGPTSKAYTSINKIRKRAGLADLT--------TGLTKDQ 426

Query: 457 LRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWA 516
            R  + ++RR+E+  E  RY D+IR    E                    VT  G     
Sbjct: 427 FRDSVYLDRRLELVGECHRYFDLIRQTGTE--------------------VTGVG----- 461

Query: 517 FTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572
                 E        L+  GK    A      R YL+ IP  E+  N  L QNPG+
Sbjct: 462 -----PEGKGILLKNLKLVGKTNVAA------RHYLYAIPQGEIDRNPKLTQNPGW 506