Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 592 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  136 bits (343), Expect = 2e-36
 Identities = 165/640 (25%), Positives = 262/640 (40%), Gaps = 117/640 (18%)

Query: 1   MKKLLLYIGAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPEDGQQ 60
           MKK  ++I    L L+AC  L+  P S+ S +  + TE  +++  +  Y  DF P++   
Sbjct: 1   MKKQYIWILLACLSLAACKKLDQQPESTASKKAVFGTENGLKLYTNSFYGMDFLPKNSTS 60

Query: 61  QTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIENGASA 120
           Q   SD    + +     +G     N   +S W   ++ +   N  IE  +   +   SA
Sbjct: 61  QDAMSDYLAVKSVPDFIREGGFAANN---SSGW--TWRDLRNINYFIENCN---DPAVSA 112

Query: 121 TTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEE-GLTMGRTDKSIVLAQIYKDF 179
           T  N  +  A++ RA  Y + + +FGD+P +   +  ++  L  GR  + +V+  +  D 
Sbjct: 113 TVRNNYLGIARYFRAYFYMEKVKRFGDVPWINKPLDIDDPALNAGRNKRELVMDSVLADI 172

Query: 180 DDA-ISVLPTSYTDQQRATQGAALALKARVALI----------------MEDW-ETAADA 221
           + A  ++L T+   +   T+  A A K+R+ L                    W E AA A
Sbjct: 173 NFACANILATNDASRTTITKWVAYAYKSRICLFEGTYRKYHTELSLGATANKWLEDAASA 232

Query: 222 AKAVMDLNIYELHP------DFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQV 275
           A  ++    Y L+        +  +F S T  +NE +    + A  D+ LG         
Sbjct: 233 ADEIIKKGGYSLNTAGGAGVSYRQVFTSNTPLANEVL----QAAVADVNLGV-------- 280

Query: 276 YNDLPRNVGGWTQTCPSWELLAAFTCT--------DGLLINESPLFDP---HEPFANRDP 324
                 N   W  T  ++   A+FT T        DG      P +      +   NRD 
Sbjct: 281 -----LNEANWWWTSGTYGAKASFTRTFINTFLKLDGTPYTNDPAYSTMLFKDEVKNRDL 335

Query: 325 RLAETIVPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYA-SFDGL-VWKKG 382
           RL +TI       LG +Y                I +     A   ++ +F G    K  
Sbjct: 336 RLKQTI------RLG-DYK--------------RISSGQQVPAPPVFSYTFTGYQPIKYT 374

Query: 383 IDETWLQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNS----VLDALNEVRARAYGV 438
           +D+T+   G      I   RYAE+LL YAEAK EL  + ++     + AL        G+
Sbjct: 375 LDDTYFDAGALNTNAIALFRYAEVLLNYAEAKAELGTLTDAEWALTIGALRSRAGITGGL 434

Query: 439 DKSDKASYPAFTSN------DQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRK 492
                 + P  T+N      D + L  ++R ER +E++ E +RY D++RWK    +M ++
Sbjct: 435 SIKPTFADPYLTTNYFPGITDATLL--EIRRERGIELSLEGLRYADLLRWKRG-PLMEQE 491

Query: 493 TYGILYPASLCIERVTSQGDWFWAF------TPEM---------DEDGCADFSKLEEAGK 537
             G   PA      +   G    AF      TP +            G A  S+L + G 
Sbjct: 492 WNGFYVPALNTPMDLNEDGILDVAFYQGTRPTPGVAGVTYVDVSATIGGAANSQLLKNGS 551

Query: 538 CQALA-----VRSWNDRQYLWPIPTTELQINENLKQNPGY 572
              L       R WN+R Y +PIP ++LQ N NLKQNPG+
Sbjct: 552 SGELTWMKEIPRKWNERNYYYPIPLSDLQRNPNLKQNPGW 591