Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 567 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  122 bits (307), Expect = 3e-32
 Identities = 143/503 (28%), Positives = 203/503 (40%), Gaps = 120/503 (23%)

Query: 116 NGASATTI-NRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSIVLAQ 174
           NG +AT   +RLI E  + RA  YA+L+ ++G +PLV   +   + L + R     V+ Q
Sbjct: 137 NGYTATEQKDRLIGEVLYLRAYFYAELLKRYGGVPLVTQVLGVNDDLDLARNTYDQVVKQ 196

Query: 175 IYKDFDDAISVLPTSY-----------TDQQRATQGAALALKARVALIMED--------- 214
           I  D D A   LPTSY               RAT+ AA ALK+R  L             
Sbjct: 197 IVDDCDAAALKLPTSYLIAGPRSISVSNYYGRATKWAAQALKSRTLLYAASAINNPNNDA 256

Query: 215 --WETAADAAKAVMDLN----IYELHPDFGN---LFLSTTKNSNEFIFKIP-------RD 258
             W  A  AAK   D+        L+P       LF   T +  E I+  P         
Sbjct: 257 AKWIAAYTAAKPFFDVTPVTPTMTLNPGIAGYEALFRGNTASLTEIIWSRPATNSNSLET 316

Query: 259 ATYDIYLGTGNGGVNQVYNDLPRNVGGWTQTCPSWELLAAFTC-TDGLLINE-SPLFDPH 316
           A + I +    GG+N                 PS  L+ A+   T G  I++ +  ++P 
Sbjct: 317 ANFPIGIDGSTGGIN-----------------PSQALVDAYEMKTSGKPISDPTSGYNPA 359

Query: 317 EPFANRDPRLAETIVPFGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQ---YAS 373
            P+ +RDPRLA +I   G+                  + TG  +  +D   +     Y S
Sbjct: 360 NPYNDRDPRLAASIFYNGA-----------------LFKTGRSIETFDGGLDGPQKVYGS 402

Query: 374 FDGLVWKKGIDETW-LQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNSVLD---ALN 429
             G   KK +D    L        + IY R AE+LL YAEA+   NE D  V D   A+N
Sbjct: 403 LTGYYMKKHLDVNLNLTQAQASQHNFIYFRLAEMLLNYAEAR---NEADGPVADVYTAIN 459

Query: 430 EVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVM 489
            +R RA         + PA  +  Q  +R ++R ERR+E+A E  RY D  RW +A+   
Sbjct: 460 RIRTRA------TMPNLPAGLTKAQ--MRDRIRNERRVELAFEGHRYWDARRWNIAKDAF 511

Query: 490 NRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDR 549
           N    G+         ++   G  F  +TP   ED                   R + + 
Sbjct: 512 NGPFTGM---------KIVKTGSTF-TYTPYKIED-------------------RIFKEF 542

Query: 550 QYLWPIPTTELQINENLKQNPGY 572
             L+PI   E+  N  L QNPG+
Sbjct: 543 MNLYPIQQREILANPKLVQNPGW 565