Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  119 bits (299), Expect = 3e-31
 Identities = 157/646 (24%), Positives = 271/646 (41%), Gaps = 138/646 (21%)

Query: 1   MKKLLLYIGAGILLL--SACHD--LNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPE 56
           +K + +Y+   I+L+   +C    L+  P++  + + ++  E ++++  + LY     P 
Sbjct: 2   LKNIGIYLSIVIILICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLY--SLVPG 59

Query: 57  DGQQQTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIEN 116
            G      +DD  S ++ T   D  + G+    ++  G  +  +   N  +E   +A   
Sbjct: 60  AGIM----TDDTQSDNMETLPYDKVVAGEYLVPSTGGGWSWSYLRSVNYFLENYGKA--- 112

Query: 117 GASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLV--LTDVSTEEGLTMGRTDKSIVLAQ 174
            A+A   N  +  A+  RA  Y   + +FG++P      +++ E  L   +  +++V+  
Sbjct: 113 NAAAEAKNHYVGVARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDS 172

Query: 175 IYKDFDDAISVLPTSYTDQQRATQGAALALKARVALIMEDWE-------------TAADA 221
           + KD D A + + TS T      +  AL+LK+R+ L    W               A DA
Sbjct: 173 VLKDLDYASANIRTSKTPLWTINRYVALSLKSRICLFEGTWRKYRGIADADRFLIAAKDA 232

Query: 222 AKAVMDLNIYELHP------DFGNLFLSTTKNSNEFIFKIPRDATYDIY--LGTGNGGVN 273
           AK V+D   Y L+       D+ NLF  +    NE I         ++       +G   
Sbjct: 233 AKKVIDEGGYSLYTTGKPDVDYLNLFAMSDAPQNEVILAYEYSTILNLRHAFSAESGAYG 292

Query: 274 QVYNDLPRNVGGWTQTCPSWELLAAFTCTDGLLINESPLFDPH---EPFANRDPRLAETI 330
           +          G+T+     E++ ++   DG        +      + F NRDPRL +T+
Sbjct: 293 R----------GFTK-----EMVNSYLMKDGTPFTSVAGYATKTYMDEFENRDPRLIQTV 337

Query: 331 VP-----FGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDE 385
           +               ++P P+         G   T Y      ++   D       I E
Sbjct: 338 LNPLYTRTDRTDASKRFSPIPKI-------PGGTPTGY---LQVKFYQDDP------IKE 381

Query: 386 TWLQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNSVLD-ALNEVRARA--------- 435
            + Q+    D D    RYAE+LL YAEA  EL  I  + LD  +N++R R          
Sbjct: 382 IYGQS----DNDAPVIRYAEVLLNYAEAMAELGTITQADLDLTINKLRDRVGMTGAAHLN 437

Query: 436 --YGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKT 493
               +D    A YP  +S     L  ++R ERR+E+A E  RY+DI+RWK A  ++ +K 
Sbjct: 438 MGVAIDPVLAAQYPDVSS----ALILEIRRERRVELAGEGFRYSDILRWK-AGNLLAKKF 492

Query: 494 YGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFS------KLEEAGKCQAL------ 541
           YGI +P           G++      ++ +DG  DF+       ++  G   A+      
Sbjct: 493 YGIYFP---------GLGEY------DLTKDGKLDFAIVAAIPAVKTPGVTYAVINKDIY 537

Query: 542 --------------AVRSWND-RQYLWPIPTTELQINENLKQNPGY 572
                           +++N+ + YL+PIPT+EL +N+NL QNPG+
Sbjct: 538 LSNGNSGNIVPYPNQTKTFNENKNYLFPIPTSELLLNKNLIQNPGW 583