Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 583 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  115 bits (287), Expect = 6e-30
 Identities = 125/449 (27%), Positives = 188/449 (41%), Gaps = 54/449 (12%)

Query: 86  NAWVTSLWGNQYKAISRANAVIEKSHRAIENGASATTINRLIAEAKFHRAAAYAKLIVKF 145
           N+  T +W   Y+ I R N +++    A     SA T   +IAEA++ RA  Y  LI  F
Sbjct: 104 NSDFTGMWSVPYQNIRRVNVLLQNIGGA---PLSAATKKGMIAEARYLRAWYYFLLIRAF 160

Query: 146 GDLPLVLTDV-STEEGLTMGRTDKSIVLAQIYKDFDDAISVLPTSYT-------DQQRAT 197
           G +PL+   V    E   + R+     +  I  + D A + LPT+ T       +  R T
Sbjct: 161 GGVPLLGDKVYDITEDFNLKRSTYQECVNYIVSECDAAKADLPTNVTIVTSQPQNYGRIT 220

Query: 198 QGAALALKARVALI---------------------------MEDWETAADAAKAVMDLNI 230
           QG  + LK+RV L                             E W+ AADAA  +++   
Sbjct: 221 QGTCMGLKSRVLLYAASPLFNGGQLATGGEVRELTGYAAYDKERWKKAADAALDIINTGN 280

Query: 231 YELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYND--LPRNVGGWTQ 288
           Y L+ D G    +T +N   F +K+ +      YL     G  + +    LP++  G   
Sbjct: 281 YSLYVDNGAASGTTNRNGYGF-YKVFQMRVNSEYLFAAMRGAQREFETFLLPQSRSGGYA 339

Query: 289 TCPSWELLAAFTCTDGLLINES-PLFDPHEPFANRDPRLAETIVPFGSNHLGYEYNPHPE 347
              S + +  F   +G  INE+  L+DP  P+ANRDPR A +++  G+  +    N  P 
Sbjct: 340 FTVSQQTVDKFPMINGKAINEAGSLYDPANPYANRDPRFANSVIYNGAPWILSGNNAAP- 398

Query: 348 ALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQDIIYCRYAEIL 407
               +N   G   T+     +       G   +K + E    NG +    I   RYAEIL
Sbjct: 399 ----VNTYVGSGTTD---AVSGPLGFNTGYFPRKYLLENSTGNGERCWGLI---RYAEIL 448

Query: 408 LTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRM 467
           L YAEA  E +     V   L ++R RA G+      +Y       Q  +R  ++ ER +
Sbjct: 449 LNYAEALNEYSGPVAEVYAQLRKIRERA-GITAGTDGNYGIKADATQDEMRTIIQKERDV 507

Query: 468 EMAKEHMRYTDIIRWKLAEKVMNRKTYGI 496
           E+  E  R  D  RWK A     +   G+
Sbjct: 508 ELFMEEHRMWDARRWKTAAVDFEKPIRGV 536