Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 560 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  146 bits (368), Expect = 2e-39
 Identities = 152/537 (28%), Positives = 234/537 (43%), Gaps = 81/537 (15%)

Query: 67  DYTSRDLLTSFDDGTL----NGQNAWVTSL---WGNQYKAISRANAVIEKSHRAIENGAS 119
           D  S D ++S    T+    NG+ + V ++   W N YK I RAN  +        N   
Sbjct: 74  DAASDDAISSSPASTIEYFVNGRISAVATVDNSWDNNYKTIRRANIFLANIDVVPLNQKG 133

Query: 120 ATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDV-STEEGLTMGRTDKSIVLAQIYKD 178
                +  +EA+  RA AY +LI +FG +PL+   V   ++ + + R   +  +  +  +
Sbjct: 134 LKVFWK--SEARILRAIAYFELIKRFGGVPLLGDKVLGLDDNIQLPRNTYAECVKYVVDE 191

Query: 179 FDDAISVLPTSYT-----DQQRATQGAALALKARVALI-----------MEDWETAADAA 222
            D   ++     T     D  R TQG ALALKAR+ L            +  W  AA AA
Sbjct: 192 CDALKAIARPDNTLAADEDYGRVTQGVALALKARILLYDASPLNNPTNDLTKWAAAAQAA 251

Query: 223 KAVMDLNIYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYNDLPRN 282
           K VM+LNI+ L   + ++F   T+ ++E I    R  T+D  L T N  V         N
Sbjct: 252 KDVMNLNIFSLTAAYTSVF--NTRKNSEVILAYQRAVTFD--LETRNAPVGYTAT----N 303

Query: 283 VGGWTQTCPSWELLAAFTCTDGLLINESPL-FDPHEPFANRDPRLAETIVPFGSNHLGYE 341
             G   T P+ EL+ AF   +G  I++    ++  +P+  RDPR   TI    +  L   
Sbjct: 304 ASGSGYTSPTQELVDAFDMANGRAISDPASGYNAADPYTGRDPRFYRTIFHNNAKWLNRI 363

Query: 342 YNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQ--DII 399
              +   L       G  V N  TR         G   +K ++ET+       +Q  +  
Sbjct: 364 IQTYDGGLD----RPGSAV-NVQTRT--------GYYMRKFLNETFESASVYSNQTHNFP 410

Query: 400 YCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAY--GVDKSDKASYP--AFTSNDQS 455
             RYAEILL YAEA  E  +   +  +A N+++A     G+     A Y     T+  Q+
Sbjct: 411 IFRYAEILLNYAEAMNEAADNAVNRTEAFNQLKALRLRAGIAIGSTAGYQHGLKTTMTQA 470

Query: 456 TLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFW 515
            +R  +R ERR+EMA E  R+ DI RWK+A  V+N   +G+         ++    +  +
Sbjct: 471 EMREAIRHERRVEMAFEEQRFWDIRRWKIAGTVLNGTLHGM---------QIIKNANGTF 521

Query: 516 AFTPEMDEDGCADFSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572
           ++T                  +  AL V     + Y +PI  +E+  N NL QNPG+
Sbjct: 522 SYT------------------QTNALNVSFDAAKMYRYPIAASEVNKNRNLTQNPGW 560