Pairwise Alignments

Query, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 578 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  413 bits (1061), Expect = e-119
 Identities = 250/597 (41%), Positives = 344/597 (57%), Gaps = 44/597 (7%)

Query: 1   MKKLLLY--IGAGILLLSACHDLNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPEDG 58
           M K ++Y  +  G +  S+C  L+L+  SS +T ++Y+ + E+++AV++LYR DFW    
Sbjct: 1   MNKTIIYTFLAIGFVTASSCKKLDLSDPSSPATGSFYTNQNELELAVNDLYRIDFWTSAK 60

Query: 59  QQQTDWSDDYTSRDLLTSFDDG------TLNGQNAWVTSLWGNQYKAISRANAVIEKSHR 112
                W + ++          G      +L   NA V + + N YKAI+R N  +E   R
Sbjct: 61  TATGTWEEFFSDNCFYRGGSGGNPVIAGSLASDNANVQTYYLNCYKAIARVNTFLENKDR 120

Query: 113 AIENGASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMGRTDKSIVL 172
           A  N   A  I RL AE +  RA  Y KLI  FGD+PL    ++ EE   + +T K+ + 
Sbjct: 121 AAAN-TPAAIITRLEAEMRLIRAYQYTKLITHFGDVPLNTKTLTIEEAKNVNKTSKADIY 179

Query: 173 AQIYKDFDDAISVLPTSY-TDQQRATQGAALALKARVALIMEDWETAADAAKAVMDLN-- 229
             +  +++ A   LP +Y T  +R T+GAALAL+AR AL M DWETA  A+ AVM+L   
Sbjct: 180 TFLKGEYEFAAQNLPQTYGTAVKRLTKGAALALEARTALYMADWETARTASLAVMNLTGV 239

Query: 230 -IYELHPDFGNLFLSTTKNSNEFIFKIPRDATYDIYLGTGNGGVNQVYND-LPRNVGGWT 287
             Y L+  + NLF    + S E IF IPRD T  ++          V +D L RN GG+ 
Sbjct: 240 GAYTLNASYDNLFQLAGEQSAEIIFSIPRDQTQQVF---------SVPDDILTRNAGGFG 290

Query: 288 QTCPSWELLAAFTCTDGLLINESPLFDPHEPFANRDPRLAETIVPFGSNH---------- 337
            T P+ EL+ AF CTDG  I+ESPL++P +PF NRDPRL  TIVPF +N           
Sbjct: 291 ATLPTRELVDAFECTDGKPIDESPLYNPLDPFTNRDPRLIATIVPFYNNSPSTVVPRTSY 350

Query: 338 -LGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQ 396
            LGY YNPHP++    +   G  VTN DTRA A +ASF G V+KKG+ + W  +  K D 
Sbjct: 351 WLGYNYNPHPDSAQVWSNKLGRKVTNNDTRAVAPFASFTGFVFKKGVAQNW-SDTHKEDN 409

Query: 397 DIIYCRYAEILLTYAEAKIELNEIDNSVLDALNEVRARAYGVDKSDKASYPAFTSNDQST 456
           D I  R+AEILLTYAEAKIEL + D +VLDA+N+VRARAYGV  S  ASYPA T+ D + 
Sbjct: 410 DAIIIRFAEILLTYAEAKIELGQADATVLDAINKVRARAYGVPVSQTASYPAITTLDLTQ 469

Query: 457 LRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKTYGILYPASLCIERVTSQGDWFWA 516
           L++ LR ERR+E A E +RY D+IRWKLAEK + R   G+  P +       ++  W + 
Sbjct: 470 LKNVLRRERRVEFAFEGLRYMDLIRWKLAEKALTRPVIGLPDPVN------QNRAKWPFP 523

Query: 517 FTPEMDEDGCADFSKLEEAGKCQALAVRSWN-DRQYLWPIPTTELQINENLKQNPGY 572
               +D+DG AD+S        + L  R+++  +QYLWP+P  E++ N  L QNP Y
Sbjct: 524 GVTPIDDDGIADYSGF--GADVKVLFQRNFDKSKQYLWPLPAVEVRANPKLTQNPNY 578