Pairwise Alignments

Query, 446 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 445 a.a., sigma-54-dependent Fis family transcriptional regulator from Pedobacter sp. GW460-11-11-14-LB5

 Score =  466 bits (1200), Expect = e-136
 Identities = 246/443 (55%), Positives = 323/443 (72%), Gaps = 5/443 (1%)

Query: 4   ILIIDDEVQIRSLLARMLGLEGYEVCQAGDCKAAIRQLEIQQPDVALCDVFLPDGNGVDL 63
           +LIIDDE +I SLL+R++ LEG++  QA   K  ++ L+     + + DV LPD NGV L
Sbjct: 5   VLIIDDEKKICSLLSRIIELEGFKTLQANTGKEGLKLLKNNDVSIVISDVKLPDVNGVAL 64

Query: 64  VLNIKKTAPNVEVILLTAHGNIPDGVQAIKNGAFDYITKGDDNNKIIPLISRAVEKAKMN 123
           V +IK     VE+I LTA+G I DGV AIKNGAFDY+ KGDDN+KIIPL+ +A++K+ + 
Sbjct: 65  VKDIKAIKSYVEIINLTAYGTIADGVLAIKNGAFDYLVKGDDNDKIIPLLYKAMDKSNLQ 124

Query: 124 VRLEKLEKKVSQLYSFDSILGESKVLKEAVMLAQKVSVTDVPVLLTGETGTGKEVFAQAI 183
            R+  LE K+++ +SF +I+G+SK L EA+ LA+KVS TD  VLL GETGTGKEVFAQ+I
Sbjct: 125 RRVSDLENKIAKKHSFQTIIGQSKSLMEAIDLAKKVSATDTTVLLLGETGTGKEVFAQSI 184

Query: 184 HYNSKRSKQSFVAVNCSSFSKELLESEMFGHKAGSFTGALKDKKGLFEEANNGTIFLDEI 243
           HY S R+ + FVA+NCS FS +LLESE+FG+KAG+FTGA KDKKGL EEAN GT+ LDEI
Sbjct: 185 HYESPRAAKPFVALNCSGFSPDLLESELFGYKAGAFTGANKDKKGLLEEANGGTLLLDEI 244

Query: 244 GEMAFELQAKLLRILETGEYIKIGDTKPTHVNVRIIAATNRNLTEEIKAGRFREDLFYRL 303
           GEM  +LQAKLLR+LE+  +IK+GDT+   VNVRI+AATN++L  +  +G+FR DL+YRL
Sbjct: 245 GEMNLDLQAKLLRVLESQTFIKVGDTQTQQVNVRILAATNKDLKADAASGKFRSDLYYRL 304

Query: 304 SVFQVHLPALRERTGDIRILATAFAKSFSEKLSYTVNEMTPAFLHALEQQPWKGNIRELR 363
           SVF + LP LRER  DI  LA  + K F++K++ +  +M    L  L    WKGNIREL+
Sbjct: 305 SVFTITLPPLRERKADIPALAKYYLKEFADKVNRSTPKMDDKILSLLSDHSWKGNIRELK 364

Query: 364 NVIERSLIVCEGGHLDVCDLPLEIQNTHYECSDDNIGSFELAAMERRHIARVLEYTKGNK 423
           NVIER +I+ +G  L V  LP E     +E +      + L  +E++HI +VL +TKGNK
Sbjct: 365 NVIERLVILSDGDTLSVTALPPEF----FEFAPIE-NDYNLQQIEKQHIQKVLIHTKGNK 419

Query: 424 TETARLLKIGLTTLYRKIEEYKI 446
           TET+RLL IGLTTLYRKIEEY+I
Sbjct: 420 TETSRLLGIGLTTLYRKIEEYQI 442