Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 453 a.a., DNA repair protein RadA from Pseudomonas stutzeri RCH2

 Score =  388 bits (996), Expect = e-112
 Identities = 199/455 (43%), Positives = 298/455 (65%), Gaps = 4/455 (0%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRPVSGIETQKAKPVI 60
           MAK K +Y C+ CG   PKW G+C  CG WNT VE ++          +G   ++A    
Sbjct: 1   MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETVIEGAAPPSGR-AGWAGEQANIRT 59

Query: 61  LSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPDK-KI 119
           L+E+  ++ PR +    EL+RVLGGGLV GS+VLIGG+PGIGKST+++QT+  +      
Sbjct: 60  LAEVSVEEVPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAQHYPA 119

Query: 120 LYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQTISTE 179
           LYV+GEES +Q+ +RA RL        ++ ET +E I    +   P +++IDSIQTI TE
Sbjct: 120 LYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIESIIATARLEKPKVMVIDSIQTIFTE 179

Query: 180 NIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG 239
            ++S+PG +AQVRE +A ++RFAK++ T + L+GH+ KEG++AGP+VLEH+VDTVL FEG
Sbjct: 180 QLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG 239

Query: 240 DQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIE 299
           +     R+LR++KNRFG+  ELG++ M   GL++V+NPS + L++  E + G  + +  E
Sbjct: 240 ESDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWE 299

Query: 300 GVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGG 359
           G RP L+E QALV ++   NP+R   G D  R+ MLLAVL +        +DVF+N+ GG
Sbjct: 300 GTRPMLVEVQALVDTSHLANPRRVTLGLDQNRLAMLLAVLHRHGSIPTYDQDVFINVVGG 359

Query: 360 LKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEKLGFK 419
           +KV + A DLA+++A++SS  +  ++ ++ + GE+GLSGEIRPV   ++R+ EA K GFK
Sbjct: 360 VKVLETAADLALMAAVISSLRNRPLDTDLLVFGEVGLSGEIRPVPSGQERLKEAAKHGFK 419

Query: 420 RFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALF 454
           R ++PK N          ++++ V ++E+A  ALF
Sbjct: 420 RAIVPKGNAP--KEAPAGLQIIAVTRLEQALDALF 452