Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

 Score =  370 bits (949), Expect = e-107
 Identities = 191/456 (41%), Positives = 292/456 (64%), Gaps = 6/456 (1%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKE---TTNRRPVSGIETQKAK 57
           M K K  YVC+ CG + P+W G+C +CG WN+  E  +        N R V      +AK
Sbjct: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAK 60

Query: 58  PVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPDK 117
              L++I+  + PR      EL+RVLGGG+VPG+ +LIGG PG GKSTL++QT+  +  +
Sbjct: 61  VQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ 120

Query: 118 K-ILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQTI 176
              LYV+GEES +Q+ +RA RL        ++ ET++++I    +   P +++IDSIQ +
Sbjct: 121 MPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAEQEKPRIMVIDSIQVM 180

Query: 177 STENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQ 236
              +++SSPGS+AQVRE + ++ R+AK+ +  V ++GH+ K+G++AGPKVLEHI+D  + 
Sbjct: 181 HVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL 240

Query: 237 FEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIAS 296
            +GD    +R LRS KNRFG+  ELG++ M   G+R+VSNPS + LS+  E  SG ++  
Sbjct: 241 LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVMV 300

Query: 297 AIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNI 356
             EG RP L+E QALV  +   NP+R A G +  R+++LLAVL K  G ++A +DVF+N+
Sbjct: 301 VWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNV 360

Query: 357 AGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEKL 416
            GG+KV + + DLA++ A+LSS  D  +  +V + GE+GL+GEIRPV   ++R+ EA K 
Sbjct: 361 VGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLNEAFKH 420

Query: 417 GFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRA 452
           GFK+ ++P  N+     + ++I    V+K+ +A  A
Sbjct: 421 GFKKAIVPIANMPKGGIEGMQIH--GVKKLSDAIAA 454