Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 454 a.a., DNA repair protein RadA (RefSeq) from Shewanella amazonensis SB2B

 Score =  377 bits (968), Expect = e-109
 Identities = 197/458 (43%), Positives = 294/458 (64%), Gaps = 9/458 (1%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRP----VSGIETQKA 56
           MAK KT YVC+ CGQ+ P+W G+C +C EWN+  E  +   T  R       +G    + 
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACLEWNSITEVRLGAATVARSGRFSGYAGAGVSEV 60

Query: 57  KPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPD 116
           K   L +I+ ++ PRI     E +RVLGGG+VPGS +LIGG PG GKSTL++QT+ ++ +
Sbjct: 61  KT--LDQIDLNELPRIPSSFTEFDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCQLAE 118

Query: 117 -KKILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQT 175
               LYV+GEES +Q+ +RA RL   +S   ++ ETS+E +        P L+++DSIQ 
Sbjct: 119 VMPALYVTGEESLQQVAMRAHRLGLPTSKLKMLSETSVETLCDIALKEQPKLIVVDSIQV 178

Query: 176 ISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVL 235
           +   +++SSPGS+AQVRE ++ + RFAK+    V+++GH+ K+GS+AGPKVLEH +D  +
Sbjct: 179 MHMSDVQSSPGSVAQVRESASFLTRFAKQNGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 236 QFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIA 295
            FEGD    YR LRS KNRFG+  ELG++ M + GL++V+NPS + LS+  E  SG  + 
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEASSGSLVM 298

Query: 296 SAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLN 355
              EG RP L+E Q LV ++   NP+R A G D  R+ MLLAV+ +  G +++ +DVF+N
Sbjct: 299 VVWEGTRPLLVELQVLVDNSALSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 356 IAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEK 415
           + GG+KV + + DL ++ A++SS     +  ++   GE+GLSGEIRPV   ++R+ EA K
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGEVLPRDLVAFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 416 LGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRAL 453
            GFKR ++P+ N+     + +  E++ V K+ EA  AL
Sbjct: 419 HGFKRAIVPRANMPKKPPEGM--EVIGVSKLAEALAAL 454