Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 455 a.a., DNA repair protein RadA (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  382 bits (980), Expect = e-110
 Identities = 195/428 (45%), Positives = 281/428 (65%), Gaps = 7/428 (1%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRPVSGIETQKAKPVI 60
           MAK  T ++C+ CG    KW G+C  CG WN+  EE+      +++ + GI   + K V 
Sbjct: 1   MAKPATRFICAECGAAHSKWSGRCDGCGAWNSISEEVPLSAGPSKKSLGGI---RGKKVP 57

Query: 61  LSEIEADDEP--RINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP--D 116
           L ++ ++D P  R     +EL+RVLGGGLV  S VL+GG+PGIGKSTL++Q         
Sbjct: 58  LGDLASEDAPPPRRTSQLEELDRVLGGGLVDASAVLVGGDPGIGKSTLLLQAAASFARAG 117

Query: 117 KKILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQTI 176
            K +Y+SGEE+  Q+++RA RL    +   +  ET+L  I   ++  +PDL I+DSIQT+
Sbjct: 118 AKAVYISGEEATSQVRMRARRLGLADAAVKLGAETNLRDILTTLEAEAPDLAILDSIQTL 177

Query: 177 STENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQ 236
            ++ ++S+PGS+AQVR C+  ++ FAK + T V+L+GH+ KEG IAGP+V+EH+VDTVL 
Sbjct: 178 WSDTVDSAPGSVAQVRACAHELVTFAKRSGTSVILVGHVTKEGQIAGPRVVEHMVDTVLY 237

Query: 237 FEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIAS 296
           FEG++ + +RILRS+KNRFG   E+G++EM   GL +V+NPS L LS       G  + +
Sbjct: 238 FEGERGHQFRILRSVKNRFGPADEIGVFEMTGAGLAEVANPSALFLSGRDAPAPGSVVFA 297

Query: 297 AIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNI 356
            IEG RP L E QALV+ +   N +R+  G+D  R++M+LAVLE R G      DV+LN+
Sbjct: 298 GIEGTRPVLCELQALVAPSALANARRTVVGWDSGRLSMILAVLEARCGIPFTGLDVYLNV 357

Query: 357 AGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEKL 416
           AGGL++ +PA DLAV +A+LS+  D A+  E+ + GEI LSG +RPV + E R+ EA KL
Sbjct: 358 AGGLRIGEPAADLAVATALLSAREDIALPAEMVVFGEISLSGALRPVGQTENRLKEAAKL 417

Query: 417 GFKRFLLP 424
           GF + L P
Sbjct: 418 GFTKALAP 425