Pairwise Alignments

Query, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 454 a.a., DNA repair protein RadA (RefSeq) from Shewanella sp. ANA-3

 Score =  382 bits (980), Expect = e-110
 Identities = 199/458 (43%), Positives = 297/458 (64%), Gaps = 9/458 (1%)

Query: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETTNRRP----VSGIETQKA 56
           MAK KT YVC+ CGQ+ P+W G+C +C EWNT  E  +   +  R       +G  + + 
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACQEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60

Query: 57  KPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPD 116
           K   L +I+ +  PRI  H  EL+RVLGGG+VPGS +LIGG PG GKSTL++QT+  + +
Sbjct: 61  KT--LDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAE 118

Query: 117 KK-ILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQT 175
           +   LYV+GEES +Q+ +RA RL   ++   ++ ETS+EQI       SP ++++DSIQ 
Sbjct: 119 QMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEVALQESPKVIVVDSIQV 178

Query: 176 ISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVL 235
           +   ++ SSPGS++QVRE ++ + RFAK+    V+++GH+ K+GS+AGPKVLEH +D  +
Sbjct: 179 MHMSDVASSPGSVSQVRESASYLTRFAKQNGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 236 QFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIA 295
            FEGD    YR LRS KNRFG+  ELG++ M + GL++V+NPS + LS+  E  SG  + 
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVM 298

Query: 296 SAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLN 355
              EG RP L+E Q LV ++   NP+R A G D  R+ MLLAV+ +  G +++ +DVF+N
Sbjct: 299 VVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 356 IAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEK 415
           + GG+KV + + DL ++ A++SS     +  ++ + GE+GLSGEIRPV   ++R+ EA K
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 416 LGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRAL 453
            GFKR ++P+ N+         +E+V V K+ EA  A+
Sbjct: 419 HGFKRAIVPRANVP--KKPPAGMEVVGVAKLSEALEAI 454